Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 194 2e-44
>seq3106
Length=22756556
Score = 194 bits (214), Expect = 2e-44
Identities = 584/893 (65%), Gaps = 13/893 (1%)
Strand=Plus/Minus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930
|||||||||||| | ||||| || || || | |||| || || || |||||||| ||||
Sbjct 217570 CATAACTCCCATCCTCTGATACTCGCCTACCC-TCTTCTCAAAGAAGTTTGTCTTCCCTT 217512
Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATG 36990
|||| || ||||| ||||| || ||||||||||| | | | | | | | |
Sbjct 217511 CTAGAGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAGC 217452
Query 36991 ATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050
| || || ||||| || || || || || ||||| | ||| || || |||
Sbjct 217451 CCAGCTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGT 217392
Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACA 37109
| || ||||| || || ||||| | || || ||| ||| | | | | ||| | ||
Sbjct 217391 TCATGCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCT-CGATTCTGACG 217333
Query 37110 GCATCTTTAACTATATTAACAATAACT-TCTTCAGTTGGGGGATATT--TTAAATATTTA 37166
|| | | || ||| | | | || ||| | | ||| ||| | | | ||
Sbjct 217332 GCGT---TGACGATAATCTCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTG 217276
Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226
|||| | || || || ||||| || | || |||||||| || || | |||||| |||
Sbjct 217275 AACATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAA 217216
Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286
||||| | || ||||| | || | ||| || | ||| || || | |||||||| |||
Sbjct 217215 AAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCA 217156
Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346
||||| || || ||||| || || ||||| ||||| | ||| || |||| |
Sbjct 217155 GAAAAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCT 217096
Query 37347 TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406
| || |||||| | ||| || | ||| || ||||| || || ||
Sbjct 217095 TTGTCCCCAATCCAGCGCAAGGCCCAGTCCGACTTC---TTCACACAGGGCATGGTCTCG 217039
Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466
|| || || ||||| || | ||||| |||| | ||||||||||| || || | |
Sbjct 217038 ATGGCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGA 216979
Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526
|| ||||||||||| ||||| ||||| || || ||||| || || || ||||| | |||
Sbjct 216978 CTGTACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCC 216919
Query 37527 TCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586
|| | | |||||| || | |||| || | || || ||||| ||||| |||||
Sbjct 216918 TCTGTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCG 216859
Query 37587 CTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTT 37646
|| || ||||||||||| ||||| | | |||||| | ||| || || | |
Sbjct 216858 CTGGCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCT 216799
Query 37647 TTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAAT 37706
| ||| | | ||| ||||| || | ||| || || || | |||||||| |||
Sbjct 216798 TCCCAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCG 216739
Query 37707 GCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759
|| ||||||||| |||||| |||| | || || || || || |||||
Sbjct 216738 GCTTTCTTATACATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592293521949760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |