Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3106 194 2e-44 >seq3106 Length=22756556 Score = 194 bits (214), Expect = 2e-44 Identities = 584/893 (65%), Gaps = 13/893 (1%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 |||||||||||| | ||||| || || || | |||| || || || |||||||| |||| Sbjct 217570 CATAACTCCCATCCTCTGATACTCGCCTACCC-TCTTCTCAAAGAAGTTTGTCTTCCCTT 217512 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATG 36990 |||| || ||||| ||||| || ||||||||||| | | | | | | | | Sbjct 217511 CTAGAGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAGC 217452 Query 36991 ATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 | || || ||||| || || || || || ||||| | ||| || || ||| Sbjct 217451 CCAGCTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGT 217392 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACA 37109 | || ||||| || || ||||| | || || ||| ||| | | | | ||| | || Sbjct 217391 TCATGCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCT-CGATTCTGACG 217333 Query 37110 GCATCTTTAACTATATTAACAATAACT-TCTTCAGTTGGGGGATATT--TTAAATATTTA 37166 || | | || ||| | | | || ||| | | ||| ||| | | | || Sbjct 217332 GCGT---TGACGATAATCTCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTG 217276 Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 |||| | || || || ||||| || | || |||||||| || || | |||||| ||| Sbjct 217275 AACATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAA 217216 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 ||||| | || ||||| | || | ||| || | ||| || || | |||||||| ||| Sbjct 217215 AAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCA 217156 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346 ||||| || || ||||| || || ||||| ||||| | ||| || |||| | Sbjct 217155 GAAAAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCT 217096 Query 37347 TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCA 37406 | || |||||| | ||| || | ||| || ||||| || || || Sbjct 217095 TTGTCCCCAATCCAGCGCAAGGCCCAGTCCGACTTC---TTCACACAGGGCATGGTCTCG 217039 Query 37407 ATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466 || || || ||||| || | ||||| |||| | ||||||||||| || || | | Sbjct 217038 ATGGCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGA 216979 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 || ||||||||||| ||||| ||||| || || ||||| || || || ||||| | ||| Sbjct 216978 CTGTACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCC 216919 Query 37527 TCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 || | | |||||| || | |||| || | || || ||||| ||||| ||||| Sbjct 216918 TCTGTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCG 216859 Query 37587 CTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTT 37646 || || ||||||||||| ||||| | | |||||| | ||| || || | | Sbjct 216858 CTGGCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCT 216799 Query 37647 TTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAAT 37706 | ||| | | ||| ||||| || | ||| || || || | |||||||| ||| Sbjct 216798 TCCCAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCG 216739 Query 37707 GCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 || ||||||||| |||||| |||| | || || || || || ||||| Sbjct 216738 GCTTTCTTATACATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592293521949760