Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3082 100 2e-16 seq3061 98.7 8e-16 seq2997 98.7 8e-16 seq3105 96.9 3e-15 >seq3082 Length=10725151 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || ||||| ||||| || || ||||| || | | ||| | |||| |||| ||| Sbjct 1251667 TGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGC 1251608 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || ||||||||||||||||| || || || Sbjct 1251607 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTG 1251548 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | |||||||| || |||| || ||||| || Sbjct 1251547 GCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTC 1251488 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 1251487 AGTGTCTTCACGAAGATCTGCAT 1251465 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || ||||| || || ||||| || | | ||| | |||| |||| ||| Sbjct 1251439 TGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGC 1251380 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || ||||||||||||||||| || || || Sbjct 1251379 TTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTG 1251320 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| | ||||| || ||||||| || ||||| || Sbjct 1251319 GCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTC 1251260 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || || || |||||||| Sbjct 1251259 AGAGTCTTCACGAAGATCTGCAT 1251237 >seq3061 Length=7642621 Score = 98.7 bits (108), Expect = 8e-16 Identities = 145/204 (71%), Gaps = 5/204 (2%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || | || ||||| || |||||||| | | ||| | |||| |||| || Sbjct 2174621 ATGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCATCCATCTTCCAGTT- 2174563 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| ||||| |||| | |||||||| || ||||| ||||| ||||| || || || Sbjct 2174562 ---ACCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 2174506 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 |||||| ||||||||||||| || | ||| | | || |||| || || || | Sbjct 2174505 GGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGTGATGGTCTTTCCTG- 2174447 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 ||| | ||||| || |||||||| Sbjct 2174446 TAAGGGTTTTATGAAAATCTGCAT 2174423 >seq2997 Length=2481227 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA-TC 101316 || || | |||||| || | || ||||| || |||||| | | | ||| | || || Sbjct 411697 AACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGACAAAGTACATCCAATC 411638 Query 101317 GTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATC 101376 |||| ||||||||| ||||| |||| | || ||||| || ||||| ||||| ||||| Sbjct 411637 TTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATC 411578 Query 101377 TTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGT 101436 || || || |||||| ||||||||||||| || | ||| || || || ||| || Sbjct 411577 CTGGATCTTGGCCTTTACATTTTCTACAGTGTCCGAGGGTTCAACCTCGAG-GTGGTGGT 411519 Query 101437 TTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | | ||||||| || ||||| || Sbjct 411518 CTTCCCCATAACGGTTTTTATGAAAATCTGTAT 411486 >seq3105 Length=21505965 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||| || || || ||||| || |||||||| | | ||| | |||| Sbjct 7417351 AACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGTCCATCT 7417410 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| ||| || | ||||| |||| | || ||||| || ||||| ||||| ||||| Sbjct 7417411 TCCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 7417470 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTC-AGACGTTTCCACT-TCAAGAGTGACCG 101435 || || || |||||| |||||| |||||| || ||| || | || | ||| | Sbjct 7417471 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTT--CAGTCTCGTGGATGATGG 7417528 Query 101436 TTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || || || ||||||||||| ||| |||| Sbjct 7417529 TCTTCCCTGTAAAGGTTTTTACAAAAATCGGCAT 7417562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396263215602408