Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq3082 100 2e-16
seq3061 98.7 8e-16
seq2997 98.7 8e-16
seq3105 96.9 3e-15
>seq3082
Length=10725151
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || ||||| ||||| || || ||||| || | | ||| | |||| |||| |||
Sbjct 1251667 TGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGC 1251608
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| |||||||| || | | ||| || || || ||||||||||||||||| || || ||
Sbjct 1251607 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTG 1251548
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | |||||| | |||||||| || |||| || ||||| ||
Sbjct 1251547 GCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTC 1251488
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 1251487 AGTGTCTTCACGAAGATCTGCAT 1251465
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| || || || ||||| || || ||||| || | | ||| | |||| |||| |||
Sbjct 1251439 TGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGC 1251380
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| |||||||| || | | ||| || || || ||||||||||||||||| || || ||
Sbjct 1251379 TTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTG 1251320
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | ||||| | ||||| || ||||||| || ||||| ||
Sbjct 1251319 GCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTC 1251260
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| ||| || || || ||||||||
Sbjct 1251259 AGAGTCTTCACGAAGATCTGCAT 1251237
>seq3061
Length=7642621
Score = 98.7 bits (108), Expect = 8e-16
Identities = 145/204 (71%), Gaps = 5/204 (2%)
Strand=Plus/Minus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
|||||| || | || ||||| || |||||||| | | ||| | |||| |||| ||
Sbjct 2174621 ATGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCATCCATCTTCCAGTT- 2174563
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| ||||| |||| | |||||||| || ||||| ||||| ||||| || || ||
Sbjct 2174562 ---ACCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 2174506
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|||||| ||||||||||||| || | ||| | | || |||| || || || |
Sbjct 2174505 GGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGTGATGGTCTTTCCTG- 2174447
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
||| | ||||| || ||||||||
Sbjct 2174446 TAAGGGTTTTATGAAAATCTGCAT 2174423
>seq2997
Length=2481227
Score = 98.7 bits (108), Expect = 8e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA-TC 101316
|| || | |||||| || | || ||||| || |||||| | | | ||| | || ||
Sbjct 411697 AACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGACAAAGTACATCCAATC 411638
Query 101317 GTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATC 101376
|||| ||||||||| ||||| |||| | || ||||| || ||||| ||||| |||||
Sbjct 411637 TTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATC 411578
Query 101377 TTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGT 101436
|| || || |||||| ||||||||||||| || | ||| || || || ||| ||
Sbjct 411577 CTGGATCTTGGCCTTTACATTTTCTACAGTGTCCGAGGGTTCAACCTCGAG-GTGGTGGT 411519
Query 101437 TTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || | | ||||||| || ||||| ||
Sbjct 411518 CTTCCCCATAACGGTTTTTATGAAAATCTGTAT 411486
>seq3105
Length=21505965
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317
|| || | |||||| || || || ||||| || |||||||| | | ||| | ||||
Sbjct 7417351 AACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGTCCATCT 7417410
Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377
|||| ||| || | ||||| |||| | || ||||| || ||||| ||||| |||||
Sbjct 7417411 TCCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 7417470
Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTC-AGACGTTTCCACT-TCAAGAGTGACCG 101435
|| || || |||||| |||||| |||||| || ||| || | || | ||| |
Sbjct 7417471 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTT--CAGTCTCGTGGATGATGG 7417528
Query 101436 TTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||||| ||| ||||
Sbjct 7417529 TCTTCCCTGTAAAGGTTTTTACAAAAATCGGCAT 7417562
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396263215602408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |