Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq2967 95.1 2e-14 seq3110 89.7 7e-13 >seq2967 Length=1593811 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 197151 GATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAGTTTGAG 197210 ||| ||||| || ||||| || || | ||| || || | ||| || |||||||| ||||| Sbjct 99191 GATCACCACGAGGTCCAGGGTATCACCCACGCCATCAAGGTAGTCCTTCTTCAGCTTGAG 99132 Query 197211 CCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTTGATCAT 197270 |||| | || |||||||||||||| ||||| || | || |||| |||||| | ||| Sbjct 99131 CCAGTTGTGTGACCTCTTGGCAATCTCATAGGTGGCATCAACATCCAAGGTCTTCACCAT 99072 Query 197271 CAATCCCTCGCA 197282 || |||| ||| Sbjct 99071 CAGCCCCTTGCA 99060 Score = 86.0 bits (94), Expect = 8e-12 Identities = 264/400 (66%), Gaps = 10/400 (3%) Strand=Plus/Minus Query 197424 GACCTGAGACACTCCGTTCATGTACAACACGTCAAAAGCAAAGACGCACACCTGGACGGT 197483 |||| ||||| |||| | | ||| | | ||| || ||| | | |||||||| || Sbjct 98918 GACCAGAGACTCTCCACTGAGGTAGATGAGGTCGAAGGCATACAGACACACCTGCACCTG 98859 Query 197484 TATCTCTTCTTCCTTGACATCTTTACGTTTTCTGGTCGCCAGCTTTTGAAAGGGAAGGAT 197543 || ||| | | | || || || ||||| | || | || |||||| || |||| Sbjct 98858 GATTTCTGCAGCATCTACTTCCTTCCGTTTGCGAGTGGTTAGGACTTGAAACGGCTGGAT 98799 Query 197544 CTGCTTCTTCTCAACGTCCCAAGCAACTGCCTCAGCGTCCAAGATGAAAGACTTCACTCC 197603 ||||||||| | ||||||||| || || |||| ||||| ||| || || | ||| Sbjct 98798 CTGCTTCTTTTTCCAGTCCCAAGCCACAGCTTCAGTGTCCAGGATAAAGGATGTGACTGA 98739 Query 197604 CTCG---TTGATCGATTGGGGAAGCCTATTGATTATGTCGGGGTACTTCTCGGTGTTATT 197660 | || ||| ||||||| | | |||| |||| |||||||||| | ||||| | Sbjct 98738 GGGGAGTTTAATC--TTGGGGATG-CGGCTGATGATGTTGGGGTACTTCCCTGTGTTGTC 98682 Query 197661 TTCAGAGTTGCGGCTAAAAATTCTAATCTTCCCTCCCTCCATGTAG-TGAATCTGAGCCC 197719 ||| || | ||| || || | | || ||| || || | | || || ||||| |||| Sbjct 98681 TTCCTGATTCCTGCTGAAGATCTTCACCTCCCCGCCTTCTA-GAAGATGGATCTGTGCCC 98623 Query 197720 TCTCTCCGTCATACTTGTACTCGCAAGAAAAGACAG-CTCCTTTCAGCTTGCTCATCACG 197778 ||| || | || ||| ||||||| | ||| | | ||||| ||| | ||| || Sbjct 98622 TCTGCCCATAGTATTTGAACTCGCAGGTGAAGGCTGCCTCCTCAAAGCGT-TTCAGGACC 98564 Query 197779 TCTTCGATTCCCGTGGTAGGAGTGGCGAGCATAGGTTTCA 197818 || || ||| || ||| ||| | ||||||||||| Sbjct 98563 TCACTGACACCCCGAGTGGGATGGGCCAACATAGGTTTCA 98524 >seq3110 Length=25029222 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 197149 CCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAGTTTG 197208 || || ||||| || || || ||||| | || || || | ||| || |||||||| ||| Sbjct 580011 CCTATCACCACGAGGTCTAGGGTGTCACCCATTCCATCGAGGTAGTCCTTCTTCAGCTTG 579952 Query 197209 AGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTTGATC 197268 |||||| | || |||||||||||||| ||||| || | | |||| |||||| | | Sbjct 579951 AGCCAGTTGTGTGACCTCTTGGCAATCTCATAGGTGGCATCAGCATCCAAGGTCTTTACC 579892 Query 197269 ATCAATCCCTCGCA 197282 |||| |||||||| Sbjct 579891 ATCAGCCCCTCGCA 579878 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 197149 CCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAGTTTG 197208 || || ||||| || || || ||||| | || || || | ||| || |||||||| ||| Sbjct 648101 CCTATCACCACGAGGTCTAGGGTGTCACCCATGCCATCGAGGTAGTCCTTCTTCAGCTTG 648160 Query 197209 AGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTTGATC 197268 |||||| | || |||||||||||||| ||||| || | | |||| |||||| | | Sbjct 648161 AGCCAGTTGTGTGACCTCTTGGCAATCTCATAGGTGGCATCAGCATCCAAGGTCTTTACC 648220 Query 197269 ATCAATCCCTCGCA 197282 |||| |||||||| Sbjct 648221 ATCAGCCCCTCGCA 648234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676703004526720