Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_018874.1
Length=211518
Score E
Sequences producing significant alignments: (Bits) Value
seq2967 95.1 2e-14
seq3110 89.7 7e-13
>seq2967
Length=1593811
Score = 95.1 bits (104), Expect = 2e-14
Identities = 100/132 (76%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 197151 GATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAGTTTGAG 197210
||| ||||| || ||||| || || | ||| || || | ||| || |||||||| |||||
Sbjct 99191 GATCACCACGAGGTCCAGGGTATCACCCACGCCATCAAGGTAGTCCTTCTTCAGCTTGAG 99132
Query 197211 CCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTTGATCAT 197270
|||| | || |||||||||||||| ||||| || | || |||| |||||| | |||
Sbjct 99131 CCAGTTGTGTGACCTCTTGGCAATCTCATAGGTGGCATCAACATCCAAGGTCTTCACCAT 99072
Query 197271 CAATCCCTCGCA 197282
|| |||| |||
Sbjct 99071 CAGCCCCTTGCA 99060
Score = 86.0 bits (94), Expect = 8e-12
Identities = 264/400 (66%), Gaps = 10/400 (3%)
Strand=Plus/Minus
Query 197424 GACCTGAGACACTCCGTTCATGTACAACACGTCAAAAGCAAAGACGCACACCTGGACGGT 197483
|||| ||||| |||| | | ||| | | ||| || ||| | | |||||||| ||
Sbjct 98918 GACCAGAGACTCTCCACTGAGGTAGATGAGGTCGAAGGCATACAGACACACCTGCACCTG 98859
Query 197484 TATCTCTTCTTCCTTGACATCTTTACGTTTTCTGGTCGCCAGCTTTTGAAAGGGAAGGAT 197543
|| ||| | | | || || || ||||| | || | || |||||| || ||||
Sbjct 98858 GATTTCTGCAGCATCTACTTCCTTCCGTTTGCGAGTGGTTAGGACTTGAAACGGCTGGAT 98799
Query 197544 CTGCTTCTTCTCAACGTCCCAAGCAACTGCCTCAGCGTCCAAGATGAAAGACTTCACTCC 197603
||||||||| | ||||||||| || || |||| ||||| ||| || || | |||
Sbjct 98798 CTGCTTCTTTTTCCAGTCCCAAGCCACAGCTTCAGTGTCCAGGATAAAGGATGTGACTGA 98739
Query 197604 CTCG---TTGATCGATTGGGGAAGCCTATTGATTATGTCGGGGTACTTCTCGGTGTTATT 197660
| || ||| ||||||| | | |||| |||| |||||||||| | ||||| |
Sbjct 98738 GGGGAGTTTAATC--TTGGGGATG-CGGCTGATGATGTTGGGGTACTTCCCTGTGTTGTC 98682
Query 197661 TTCAGAGTTGCGGCTAAAAATTCTAATCTTCCCTCCCTCCATGTAG-TGAATCTGAGCCC 197719
||| || | ||| || || | | || ||| || || | | || || ||||| ||||
Sbjct 98681 TTCCTGATTCCTGCTGAAGATCTTCACCTCCCCGCCTTCTA-GAAGATGGATCTGTGCCC 98623
Query 197720 TCTCTCCGTCATACTTGTACTCGCAAGAAAAGACAG-CTCCTTTCAGCTTGCTCATCACG 197778
||| || | || ||| ||||||| | ||| | | ||||| ||| | ||| ||
Sbjct 98622 TCTGCCCATAGTATTTGAACTCGCAGGTGAAGGCTGCCTCCTCAAAGCGT-TTCAGGACC 98564
Query 197779 TCTTCGATTCCCGTGGTAGGAGTGGCGAGCATAGGTTTCA 197818
|| || ||| || ||| ||| | |||||||||||
Sbjct 98563 TCACTGACACCCCGAGTGGGATGGGCCAACATAGGTTTCA 98524
>seq3110
Length=25029222
Score = 89.7 bits (98), Expect = 7e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 197149 CCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAGTTTG 197208
|| || ||||| || || || ||||| | || || || | ||| || |||||||| |||
Sbjct 580011 CCTATCACCACGAGGTCTAGGGTGTCACCCATTCCATCGAGGTAGTCCTTCTTCAGCTTG 579952
Query 197209 AGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTTGATC 197268
|||||| | || |||||||||||||| ||||| || | | |||| |||||| | |
Sbjct 579951 AGCCAGTTGTGTGACCTCTTGGCAATCTCATAGGTGGCATCAGCATCCAAGGTCTTTACC 579892
Query 197269 ATCAATCCCTCGCA 197282
|||| ||||||||
Sbjct 579891 ATCAGCCCCTCGCA 579878
Score = 89.7 bits (98), Expect = 7e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 197149 CCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAGTTTG 197208
|| || ||||| || || || ||||| | || || || | ||| || |||||||| |||
Sbjct 648101 CCTATCACCACGAGGTCTAGGGTGTCACCCATGCCATCGAGGTAGTCCTTCTTCAGCTTG 648160
Query 197209 AGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTTGATC 197268
|||||| | || |||||||||||||| ||||| || | | |||| |||||| | |
Sbjct 648161 AGCCAGTTGTGTGACCTCTTGGCAATCTCATAGGTGGCATCAGCATCCAAGGTCTTTACC 648220
Query 197269 ATCAATCCCTCGCA 197282
|||| ||||||||
Sbjct 648221 ATCAGCCCCTCGCA 648234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 676703004526720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |