Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 264 2e-65
seq3101 196 9e-45
seq3071 134 3e-26
seq3143 111 3e-19
seq3055 91.5 3e-13
seq3040 91.5 3e-13
>seq3106
Length=22756556
Score = 264 bits (292), Expect = 2e-65
Identities = 578/855 (68%), Gaps = 18/855 (2%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||| || || || || || ||||||||||||||||||||||| || | || || |||||
Sbjct 217555 CTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTC 217496
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957
||||||| || || || | | | ||| || || ||||| || | || |
Sbjct 217495 CATGAAGTCAAATGGATTTTCCACTTGAAAAACCT-TGCCAAAGCCCAGCTCTAGCATGA 217437
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
| || || ||| |||||||||| | |||||| | ||||||||| || ||
Sbjct 217436 GCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCT 217377
Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTAT-CTGCACGGCTTCCCCCACAATC 48076
||| ||||| |||| ||||| ||||||| ||| || ||| ||||| | | | ||||
Sbjct 217376 TCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTG-ACGGCGTTGACGATAATC 217318
Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136
| ||| || | |||||||||| | | |||||||||| | | || ||||||
Sbjct 217317 TCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGA---ACATCAGGCAGGCG 217261
Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196
||||| | ||||| ||| || || | ||||||||| | ||||| ||| ||| || |||
Sbjct 217260 AAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGC 217201
Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256
|||| |||| | || |||||||| || | ||| ||||| ||||| || ||||||||
Sbjct 217200 ATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCT 217141
Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316
||||| || || || || | | || || ||| || | ||||| ||||||
Sbjct 217140 TCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCAATCCAG 217081
Query 48317 -GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375
| ||| |||||||| | ||||||| | || ||||| ||||| ||||| ||||||
Sbjct 217080 CGCAAG-GCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGATGGCATTGAAGAG 217025
Query 48376 CTTCTTGCACTCACCTGCGTCCGCAACATAGGTAG---TGAGCAGCTTTGCGTACATCTC 48432
|| | || | | || | ||| ||| |||| || | |||||| ||
Sbjct 217024 GAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGACT---GTACATTTC 216968
Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492
||| || | || || || ||||||||||| |||||||| | ||||| | ||
Sbjct 216967 AGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTG 216908
Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552
|||||| | ||| | ||||| || ||||||||||||||| ||||| || |||||
Sbjct 216907 AACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAA 216848
Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTG 48612
||| || || || ||| | || | | ||| | | | | || || | |||| |||
Sbjct 216847 GAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCCAGTGCTG 216788
Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTA 48672
| ||||||| || ||||| || || | ||||| ||||| || ||||| || ||
Sbjct 216787 AATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATA 216728
Query 48673 CATGCCCCATATGTC 48687
||| ||| |||||
Sbjct 216727 CATCTGCCAAATGTC 216713
>seq3101
Length=15951348
Score = 196 bits (216), Expect = 9e-45
Identities = 189/243 (78%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444
||| |||| ||||| | || || ||| || ||||| ||||||||| || ||||| ||
Sbjct 13415045 AGCAGCTGGCAGCCGTTGCTCACGTGGGTCATGACCTTCTGTTTGAGCTGAGCCACTTGC 13415104
Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504
||||| || | | |||||| ||||||| || ||||| |||| ||| ||| ||||||
Sbjct 13415105 TCCCGGAGCATGCCCGCGGTGGTGGACAGCCCCGCGTTCTCAGCCTTCAGCGTCTTCACC 13415164
Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564
|| |||||||| ||||||||||| |||||||| ||| ||||| |||||||| ||||
Sbjct 13415165 TTGTCCTCCAGGCGCGCGATGCGCTCCAGTTTCCGCTTCCGGCACTTGGTGGCCGCCAGT 13415224
Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624
|||||||| || | ||| || ||| | || ||||| |||||||| ||||||| ||| ||
Sbjct 13415225 CGGTTCCGCAGCCGCTTGCGCTCCACTTTAATGCGCTCCTGGTCTTCCATGTTGATGGGG 13415284
Query 241625 GAC 241627
|||
Sbjct 13415285 GAC 13415287
>seq3071
Length=8717935
Score = 134 bits (148), Expect = 3e-26
Identities = 178/247 (72%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 241381 CGCTAGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCAC 241440
|| |||| |||| ||||| | | ||| | || || | ||| ||||| || |||||
Sbjct 8006984 CGGTAGCAGCTGGCAGCCGCTGTTGACGTGGCTGAGCACTTTCTGCTTGAGCTGCGCCAC 8007043
Query 241441 CTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTT 241500
||| |||||||| | | ||||| | ||| | | ||| | ||||||| |||
Sbjct 8007044 CTGCTCCCGCAGCAGGCTGGCGGTGGACGCCAGCTCGGTGTTCTGGCTCTTGAGCGTCTT 8007103
Query 241501 CACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGC 241560
|| ||||||||||| |||| |||||| || || |||||| |||||| |||| ||| ||
Sbjct 8007104 GACCTTCTCCTCCAGGCGCGAGATGCGCTCGAGCTTGCGCTTGCGGCACTTGGAGGCGGC 8007163
Query 241561 CAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGAT 241620
| |||||| || || | ||| || ||||||||||| || ||||| |||||||||||
Sbjct 8007164 GATGCGGTTGCGCAGACGCTTGCGCTCCGCCTTGATCCGCTCCTGCGTGTCCATGTCGAT 8007223
Query 241621 CGGAGAC 241627
|| |||
Sbjct 8007224 GGGCGAC 8007230
>seq3143
Length=88675666
Score = 111 bits (122), Expect = 3e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214
||||||| |||||||||| ||||||||||| ||| || |||| || || |||| ||
Sbjct 4807146 TCGTCCCTGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAGGAGGCCTCTCTTCTTC 4807087
Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273
|||||||| || ||||| || || || |||||||| | ||||||||| |||||||| ||
Sbjct 4807086 AGCCAGAAGATAGCCGCAAAGGACCCCGAGAAGAACACGCCCTCCACGGCCGCGAAGGC 4807028
>seq3055
Length=6722324
Score = 91.5 bits (100), Expect = 3e-13
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 241498 CTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGC 241557
||||||||| ||||||||||| ||||| | || || || | | | ||| |||| |||
Sbjct 1720722 CTTCACTTTTTCCTCCAGCCGGGCGATCCTCTCTAGCTTCCTCTTCCTGCACTTGGAGGC 1720663
Query 241558 TGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTC 241617
|| | |||||||| | | ||| | || ||||||||||| |||||| |||||||||
Sbjct 1720662 GGCGATGCGGTTCCTCATGCGCTTCCTCTCGGCCTTGATGCGCTCCTGGGACTCCATGTC 1720603
Query 241618 GATCGGAGAC 241627
||| || |||
Sbjct 1720602 GATGGGGGAC 1720593
>seq3040
Length=4637412
Score = 91.5 bits (100), Expect = 3e-13
Identities = 89/112 (79%), Gaps = 2/112 (2%)
Strand=Plus/Minus
Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599
|| || |||||||||||||||||| ||| || ||||||||||| ||||| |||| ||
Sbjct 3943300 ATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGGTTGCTCTTT-CG 3943242
Query 213600 TTGGCAG-AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650
| ||| |||| |||||||||||||| |||| || |||||| ||| |||
Sbjct 3943241 ATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCCGTCTCTGTCTGAGAC 3943190
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931496190760960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |