Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3106 264 2e-65 seq3101 196 9e-45 seq3071 134 3e-26 seq3143 111 3e-19 seq3055 91.5 3e-13 seq3040 91.5 3e-13 >seq3106 Length=22756556 Score = 264 bits (292), Expect = 2e-65 Identities = 578/855 (68%), Gaps = 18/855 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || || || ||||||||||||||||||||||| || | || || ||||| Sbjct 217555 CTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTC 217496 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| || || || | | | ||| || || ||||| || | || | Sbjct 217495 CATGAAGTCAAATGGATTTTCCACTTGAAAAACCT-TGCCAAAGCCCAGCTCTAGCATGA 217437 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | || || ||| |||||||||| | |||||| | ||||||||| || || Sbjct 217436 GCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCT 217377 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTAT-CTGCACGGCTTCCCCCACAATC 48076 ||| ||||| |||| ||||| ||||||| ||| || ||| ||||| | | | |||| Sbjct 217376 TCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTG-ACGGCGTTGACGATAATC 217318 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||| || | |||||||||| | | |||||||||| | | || |||||| Sbjct 217317 TCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGA---ACATCAGGCAGGCG 217261 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||||| ||| || || | ||||||||| | ||||| ||| ||| || ||| Sbjct 217260 AAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGC 217201 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| |||| | || |||||||| || | ||| ||||| ||||| || |||||||| Sbjct 217200 ATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCT 217141 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 ||||| || || || || | | || || ||| || | ||||| |||||| Sbjct 217140 TCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCAATCCAG 217081 Query 48317 -GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 | ||| |||||||| | ||||||| | || ||||| ||||| ||||| |||||| Sbjct 217080 CGCAAG-GCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGATGGCATTGAAGAG 217025 Query 48376 CTTCTTGCACTCACCTGCGTCCGCAACATAGGTAG---TGAGCAGCTTTGCGTACATCTC 48432 || | || | | || | ||| ||| |||| || | |||||| || Sbjct 217024 GAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGACT---GTACATTTC 216968 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||| || | || || || ||||||||||| |||||||| | ||||| | || Sbjct 216967 AGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTG 216908 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 |||||| | ||| | ||||| || ||||||||||||||| ||||| || ||||| Sbjct 216907 AACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAA 216848 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTG 48612 ||| || || || ||| | || | | ||| | | | | || || | |||| ||| Sbjct 216847 GAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCCAGTGCTG 216788 Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTA 48672 | ||||||| || ||||| || || | ||||| ||||| || ||||| || || Sbjct 216787 AATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATA 216728 Query 48673 CATGCCCCATATGTC 48687 ||| ||| ||||| Sbjct 216727 CATCTGCCAAATGTC 216713 >seq3101 Length=15951348 Score = 196 bits (216), Expect = 9e-45 Identities = 189/243 (78%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || || ||| || ||||| ||||||||| || ||||| || Sbjct 13415045 AGCAGCTGGCAGCCGTTGCTCACGTGGGTCATGACCTTCTGTTTGAGCTGAGCCACTTGC 13415104 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | |||||| ||||||| || ||||| |||| ||| ||| |||||| Sbjct 13415105 TCCCGGAGCATGCCCGCGGTGGTGGACAGCCCCGCGTTCTCAGCCTTCAGCGTCTTCACC 13415164 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| |||||||| ||| ||||| |||||||| |||| Sbjct 13415165 TTGTCCTCCAGGCGCGCGATGCGCTCCAGTTTCCGCTTCCGGCACTTGGTGGCCGCCAGT 13415224 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | || ||||| |||||||| ||||||| ||| || Sbjct 13415225 CGGTTCCGCAGCCGCTTGCGCTCCACTTTAATGCGCTCCTGGTCTTCCATGTTGATGGGG 13415284 Query 241625 GAC 241627 ||| Sbjct 13415285 GAC 13415287 >seq3071 Length=8717935 Score = 134 bits (148), Expect = 3e-26 Identities = 178/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 241381 CGCTAGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCAC 241440 || |||| |||| ||||| | | ||| | || || | ||| ||||| || ||||| Sbjct 8006984 CGGTAGCAGCTGGCAGCCGCTGTTGACGTGGCTGAGCACTTTCTGCTTGAGCTGCGCCAC 8007043 Query 241441 CTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTT 241500 ||| |||||||| | | ||||| | ||| | | ||| | ||||||| ||| Sbjct 8007044 CTGCTCCCGCAGCAGGCTGGCGGTGGACGCCAGCTCGGTGTTCTGGCTCTTGAGCGTCTT 8007103 Query 241501 CACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGC 241560 || ||||||||||| |||| |||||| || || |||||| |||||| |||| ||| || Sbjct 8007104 GACCTTCTCCTCCAGGCGCGAGATGCGCTCGAGCTTGCGCTTGCGGCACTTGGAGGCGGC 8007163 Query 241561 CAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGAT 241620 | |||||| || || | ||| || ||||||||||| || ||||| ||||||||||| Sbjct 8007164 GATGCGGTTGCGCAGACGCTTGCGCTCCGCCTTGATCCGCTCCTGCGTGTCCATGTCGAT 8007223 Query 241621 CGGAGAC 241627 || ||| Sbjct 8007224 GGGCGAC 8007230 >seq3143 Length=88675666 Score = 111 bits (122), Expect = 3e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||||| |||||||||| ||||||||||| ||| || |||| || || |||| || Sbjct 4807146 TCGTCCCTGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAGGAGGCCTCTCTTCTTC 4807087 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| || ||||| || || || |||||||| | ||||||||| |||||||| || Sbjct 4807086 AGCCAGAAGATAGCCGCAAAGGACCCCGAGAAGAACACGCCCTCCACGGCCGCGAAGGC 4807028 >seq3055 Length=6722324 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 241498 CTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGC 241557 ||||||||| ||||||||||| ||||| | || || || | | | ||| |||| ||| Sbjct 1720722 CTTCACTTTTTCCTCCAGCCGGGCGATCCTCTCTAGCTTCCTCTTCCTGCACTTGGAGGC 1720663 Query 241558 TGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTC 241617 || | |||||||| | | ||| | || ||||||||||| |||||| ||||||||| Sbjct 1720662 GGCGATGCGGTTCCTCATGCGCTTCCTCTCGGCCTTGATGCGCTCCTGGGACTCCATGTC 1720603 Query 241618 GATCGGAGAC 241627 ||| || ||| Sbjct 1720602 GATGGGGGAC 1720593 >seq3040 Length=4637412 Score = 91.5 bits (100), Expect = 3e-13 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599 || || |||||||||||||||||| ||| || ||||||||||| ||||| |||| || Sbjct 3943300 ATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGGTTGCTCTTT-CG 3943242 Query 213600 TTGGCAG-AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650 | ||| |||| |||||||||||||| |||| || |||||| ||| ||| Sbjct 3943241 ATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCCGTCTCTGTCTGAGAC 3943190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931496190760960