Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 208 1e-48
seq3018 127 4e-24
seq3143 111 3e-19
>seq3106
Length=22756556
Score = 208 bits (230), Expect = 1e-48
Identities = 571/866 (66%), Gaps = 42/866 (5%)
Strand=Plus/Plus
Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533
|| || ||| ||||||| ||||| || | ||| ||||| || || ||| | |||
Sbjct 216713 GACATTTGGCAGATGTATAAGAAAGCCGAGGCCTCCTTTTGGACGGCAGAGGAGGTGGAT 216772
Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCA 25591
|| |||| ||||| | |||| | || || | || || ||| | || | |||
Sbjct 216773 CTTTCCAAAGACATTCAGCACTGGGAAGCCCTGAAGCCCGAGGAGAGATACTTTATATCA 216832
Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651
|||| |||| |||||||| ||| ||||| ||||| || |||||| || |||
Sbjct 216833 C--ACGTTCTGGCTTTCTTTGCCGCCAGCGATGGCATAGTCAATGAGAATTTGGTGGAGC 216890
Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711
| |||| | ||||| || | ||||| ||||||||||| |||||||| ||||
Sbjct 216891 GGTTCAGCCAAGAAGTTCAAATCACAGAGGCTCGCTGTTTCTACGGCTTCCAGATCGCCA 216950
Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACG 25768
| ||||| | || ||||| |||| || || || || || || || | |||
Sbjct 216951 TGGAAAACATTCATTCTGAAATGTA---CAGTCTCCTCATCGATACTTATATCAAAGAT- 217006
Query 25769 TCGCCGAGA----GAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824
|| | |||| ||| || || || |||||||||| ||| ||| | | ||||
Sbjct 217007 TC-CAGAGAAAGGGAGTTC--CTCTTCAATGCCATCGAGACCATGCCCTGTGTGAAGA-- 217061
Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGG 25881
|| || |||||| || ||||| ||| |||| || || | ||| || ||
Sbjct 217062 -AGTCGGACTGGGCCTTGCGCTGGATTGGGGACAA--AGAG-GCCACTTATGGGGAACGC 217117
Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTC 25941
|||||||||||||||| ||||| ||||||||||| ||||| |||||| | ||||||
Sbjct 217118 GTGGTAGCCTTTGCTGCCGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTC 217177
Query 25942 TGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAG 26000
||||| ||| | | |||||| ||||||||| || ||||||||| || |||||||||||
Sbjct 217178 TGGCTGAAG-AAACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCAG 217236
Query 26001 GGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA 26060
|| ||||| || ||| | || || ||||||||| | | || | ||| || | || |
Sbjct 217237 AGATGAGGGCCTGCACTGTGACTTCGCCTGCCTGATGTTCAAG---CACCTGATGCATAG 217293
Query 26061 ACCTTCTCAAGAGACCGT---CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGA 26117
||| || | ||| || | | |||| ||| | || || |||||| ||||
Sbjct 217294 ACCCTCAGAGCAGAGGGTGAAGGAGATTATCGTCA---ACGCCGTCAGAATCGAGCAGGA 217350
Query 26118 GTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCA 26177
||| | | ||||||||| | ||||||| ||
Sbjct 217351 GTTCCTCACGGAGGCCTTGCCAGTGAAGCTGATTGGCATGAACTGCGAGCTCATGAAGCA 217410
Query 26178 ATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCA--GACTCTAC 26235
||||| |||| ||||| ||| || || ||||||| | | || | | |
Sbjct 217411 GTACATCGAGTTCGTGGCTGACAGGCTCATGCTAGAGCTGGGCTTTGGCAAGGTTTTTCA 217470
Query 26236 AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTC 26295
||| | || || || ||||| ||||| || || || | ||||||||||| ||||||
Sbjct 217471 AGT--GGAAAATCCATTTGACTTCATGGAGAATATTTCTCTAGAAGGGAAGACAAACTTC 217528
Query 26296 TTTGAAAAGAGGGTCGGCGACTATCA 26321
||||| |||||||| ||||| |||||
Sbjct 217529 TTTGAGAAGAGGGTAGGCGAGTATCA 217554
>seq3018
Length=3443724
Score = 127 bits (140), Expect = 4e-24
Identities = 106/127 (83%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942
|||||||||||||||||||||| ||||||||||| ||||| |||||| | |||||||
Sbjct 3376905 TGGTAGCCTTTGCTGCTGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTCT 3376846
Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001
|||| ||| | | |||||| ||||||||| || ||||||||| || |||||||||||
Sbjct 3376845 GGCTGAAGAA-ACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCAGA 3376787
Query 26002 GACGAGG 26008
|| ||||
Sbjct 3376786 GATGAGG 3376780
>seq3143
Length=88675666
Score = 111 bits (122), Expect = 3e-19
Identities = 100/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942
|||| ||||| || || ||||||||| | || ||| || || |||||||| |||||||
Sbjct 4807023 TGGTGGCCTTCGCGGCCGTGGAGGGCGTGTTCTTCTCGGGGTCCTTTGCGGCTATCTTCT 4807082
Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002
|||| ||| ||| || | ||||||| || ||| ||||||||||||||||||||||
Sbjct 4807083 GGCTGAAGAAGAGAGGCCTCCTGCCCGGCCTCACCTTCTCCAACGAGCTCATCAGCAGGG 4807142
Query 26003 ACGAGG 26008
||||||
Sbjct 4807143 ACGAGG 4807148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928808296399360
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