Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3106 208 1e-48 seq3018 127 4e-24 seq3143 111 3e-19 >seq3106 Length=22756556 Score = 208 bits (230), Expect = 1e-48 Identities = 571/866 (66%), Gaps = 42/866 (5%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||| ||||||| ||||| || | ||| ||||| || || ||| | ||| Sbjct 216713 GACATTTGGCAGATGTATAAGAAAGCCGAGGCCTCCTTTTGGACGGCAGAGGAGGTGGAT 216772 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCA 25591 || |||| ||||| | |||| | || || | || || ||| | || | ||| Sbjct 216773 CTTTCCAAAGACATTCAGCACTGGGAAGCCCTGAAGCCCGAGGAGAGATACTTTATATCA 216832 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||| |||| |||||||| ||| ||||| ||||| || |||||| || ||| Sbjct 216833 C--ACGTTCTGGCTTTCTTTGCCGCCAGCGATGGCATAGTCAATGAGAATTTGGTGGAGC 216890 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| | ||||| || | ||||| ||||||||||| |||||||| |||| Sbjct 216891 GGTTCAGCCAAGAAGTTCAAATCACAGAGGCTCGCTGTTTCTACGGCTTCCAGATCGCCA 216950 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACG 25768 | ||||| | || ||||| |||| || || || || || || || | ||| Sbjct 216951 TGGAAAACATTCATTCTGAAATGTA---CAGTCTCCTCATCGATACTTATATCAAAGAT- 217006 Query 25769 TCGCCGAGA----GAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824 || | |||| ||| || || || |||||||||| ||| ||| | | |||| Sbjct 217007 TC-CAGAGAAAGGGAGTTC--CTCTTCAATGCCATCGAGACCATGCCCTGTGTGAAGA-- 217061 Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGG 25881 || || |||||| || ||||| ||| |||| || || | ||| || || Sbjct 217062 -AGTCGGACTGGGCCTTGCGCTGGATTGGGGACAA--AGAG-GCCACTTATGGGGAACGC 217117 Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTC 25941 |||||||||||||||| ||||| ||||||||||| ||||| |||||| | |||||| Sbjct 217118 GTGGTAGCCTTTGCTGCCGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTC 217177 Query 25942 TGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAG 26000 ||||| ||| | | |||||| ||||||||| || ||||||||| || ||||||||||| Sbjct 217178 TGGCTGAAG-AAACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCAG 217236 Query 26001 GGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA 26060 || ||||| || ||| | || || ||||||||| | | || | ||| || | || | Sbjct 217237 AGATGAGGGCCTGCACTGTGACTTCGCCTGCCTGATGTTCAAG---CACCTGATGCATAG 217293 Query 26061 ACCTTCTCAAGAGACCGT---CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGA 26117 ||| || | ||| || | | |||| ||| | || || |||||| |||| Sbjct 217294 ACCCTCAGAGCAGAGGGTGAAGGAGATTATCGTCA---ACGCCGTCAGAATCGAGCAGGA 217350 Query 26118 GTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCA 26177 ||| | | ||||||||| | ||||||| || Sbjct 217351 GTTCCTCACGGAGGCCTTGCCAGTGAAGCTGATTGGCATGAACTGCGAGCTCATGAAGCA 217410 Query 26178 ATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCA--GACTCTAC 26235 ||||| |||| ||||| ||| || || ||||||| | | || | | | Sbjct 217411 GTACATCGAGTTCGTGGCTGACAGGCTCATGCTAGAGCTGGGCTTTGGCAAGGTTTTTCA 217470 Query 26236 AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTC 26295 ||| | || || || ||||| ||||| || || || | ||||||||||| |||||| Sbjct 217471 AGT--GGAAAATCCATTTGACTTCATGGAGAATATTTCTCTAGAAGGGAAGACAAACTTC 217528 Query 26296 TTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||| |||||||| ||||| ||||| Sbjct 217529 TTTGAGAAGAGGGTAGGCGAGTATCA 217554 >seq3018 Length=3443724 Score = 127 bits (140), Expect = 4e-24 Identities = 106/127 (83%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||||||||||||||||||||| ||||||||||| ||||| |||||| | ||||||| Sbjct 3376905 TGGTAGCCTTTGCTGCTGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTCT 3376846 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||| ||| | | |||||| ||||||||| || ||||||||| || ||||||||||| Sbjct 3376845 GGCTGAAGAA-ACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCAGA 3376787 Query 26002 GACGAGG 26008 || |||| Sbjct 3376786 GATGAGG 3376780 >seq3143 Length=88675666 Score = 111 bits (122), Expect = 3e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||| || || ||||||||| | || ||| || || |||||||| ||||||| Sbjct 4807023 TGGTGGCCTTCGCGGCCGTGGAGGGCGTGTTCTTCTCGGGGTCCTTTGCGGCTATCTTCT 4807082 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || | ||||||| || ||| |||||||||||||||||||||| Sbjct 4807083 GGCTGAAGAAGAGAGGCCTCCTGCCCGGCCTCACCTTCTCCAACGAGCTCATCAGCAGGG 4807142 Query 26003 ACGAGG 26008 |||||| Sbjct 4807143 ACGAGG 4807148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928808296399360