Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_019559.1
Length=202946
Score E
Sequences producing significant alignments: (Bits) Value
seq3108 140 4e-28
>seq3108
Length=23989115
Score = 140 bits (154), Expect = 4e-28
Identities = 194/268 (72%), Gaps = 4/268 (1%)
Strand=Plus/Plus
Query 153745 CCCGCGTCCCTCAGATGCTCGTTGAAAACTACACAAGAACCTTTAATTGTAACGTGGCAA 153804
|| || ||| | ||||| || ||| || || | |||| | |||||||| || ||||||
Sbjct 13844571 CCTGCATCCTTGAGATGTTCTTTGCAATCTTCCTTAGAAGCCTTAATTGTGACATGGCAA 13844630
Query 153805 AAGAAGAAAGCTGTAGGTCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGTG 153864
|| ||||| | | || | |||||||| |||||||| || || || || || || |||
Sbjct 13844631 AAAAAGAAGGATATAAGCCCAGAAAACATGGCCACCTACAGTAAGAAACATGGGGTTGTG 13844690
Query 153865 CTTCAGCCCACATATAAAGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAGT-AG 153923
| ||||| | |||| ||||| || || || ||||| | || || | ||| ||
Sbjct 13844691 GTCCAGCCTCCCTATATGGATAGGATGAACATCACCGAGGTGGGA--TTGCAGAAGTCAG 13844748
Query 153924 T-ATAACGTTTTGGAATGCAACACTGGATGATGAAGGCTGTTATATGTGTCTGTTTAATA 153982
|| || || ||||||||||||||||| |||||||| ||||| |||||||| || ||||
Sbjct 13844749 CCATCACCTTCTGGAATGCAACACTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATA 13844808
Query 153983 TGTTCGGTTCTGGTAAGGTATCGGGAAC 154010
|| || |||| ||| | || |||||
Sbjct 13844809 CCTTTGGCGCTGGGAAGATCTCAGGAAC 13844836
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 649273682541440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |