Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq3108 140 4e-28 >seq3108 Length=23989115 Score = 140 bits (154), Expect = 4e-28 Identities = 194/268 (72%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 153745 CCCGCGTCCCTCAGATGCTCGTTGAAAACTACACAAGAACCTTTAATTGTAACGTGGCAA 153804 || || ||| | ||||| || ||| || || | |||| | |||||||| || |||||| Sbjct 13844571 CCTGCATCCTTGAGATGTTCTTTGCAATCTTCCTTAGAAGCCTTAATTGTGACATGGCAA 13844630 Query 153805 AAGAAGAAAGCTGTAGGTCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGTG 153864 || ||||| | | || | |||||||| |||||||| || || || || || || ||| Sbjct 13844631 AAAAAGAAGGATATAAGCCCAGAAAACATGGCCACCTACAGTAAGAAACATGGGGTTGTG 13844690 Query 153865 CTTCAGCCCACATATAAAGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAGT-AG 153923 | ||||| | |||| ||||| || || || ||||| | || || | ||| || Sbjct 13844691 GTCCAGCCTCCCTATATGGATAGGATGAACATCACCGAGGTGGGA--TTGCAGAAGTCAG 13844748 Query 153924 T-ATAACGTTTTGGAATGCAACACTGGATGATGAAGGCTGTTATATGTGTCTGTTTAATA 153982 || || || ||||||||||||||||| |||||||| ||||| |||||||| || |||| Sbjct 13844749 CCATCACCTTCTGGAATGCAACACTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATA 13844808 Query 153983 TGTTCGGTTCTGGTAAGGTATCGGGAAC 154010 || || |||| ||| | || ||||| Sbjct 13844809 CCTTTGGCGCTGGGAAGATCTCAGGAAC 13844836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 649273682541440