Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq3108 149 4e-30
seq3114 136 3e-26
seq3133 129 4e-24
seq3129 129 4e-24
seq3124 109 4e-18
seq3143 95.1 8e-14
seq3099 93.3 3e-13
seq3063 91.5 1e-12
seq3134 89.7 3e-12
seq3061 87.8 1e-11
seq2997 87.8 1e-11
seq3116 86.0 4e-11
seq3105 86.0 4e-11
>seq3108
Length=23989115
Score = 149 bits (164), Expect = 4e-30
Identities = 375/559 (67%), Gaps = 16/559 (3%)
Strand=Plus/Minus
Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAAT- 474382
||| ||| |||||| |||| | || || || | | ||||| | ||| | | ||
Sbjct 13305115 GAACTGCTGTTGGTACTGATCTTGGCACCACCTTCTCCTGTGTGGATGTCTTCTAGCATT 13305056
Query 474383 GGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCT 474442
|| ||||| || || ||||| ||||| || | ||| || || ||| || || |||
Sbjct 13305055 GGAAAAGTGGAGATCATTGC-AATGATCAGGAAAATCAAATCACTCCAAGTTACGTCTCT 13304997
Query 474443 TTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCT 474502
| | | | || ||| || ||| ||||||||| ||| |||||| ||| || ||
Sbjct 13304996 GTAATTAACACCGAAGGACTGATTCAAGATGCTGCAAAAAATCAAGTGGCAATAAAACCA 13304937
Query 474503 GTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTC 474562
| || || |||| |||| || ||| ||| ||| ||| ||||| | | ||||
Sbjct 13304936 GCCAACACAGTTTTCAATGCCAAGCATCTGACTGGATGTAGATTTCATGATGCTATTGTC 13304877
Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT- 474621
|| ||||||||| |||||||| || | |||| | |||| | || ||| | |
Sbjct 13304876 CAGTCTGATATGAAGCATTGGCCCTTCATGGTGGTGAATGAGGCAGGC---CCAAAGTTC 13304820
Query 474622 -AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGG 474680
|| || |||||| ||| || || || || | || | || | || || ||||
Sbjct 13304819 CAGTAG-AATACAA--AGGAGAGACAAAGAGCTTCTGTCCAAAGAAAGTATCATCTATGG 13304763
Query 474681 TTTTAGCCAAAATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAA-GTAACTGATG 474737
| | | || ||||| ||| || |||| |||||||| |||| || || |||
Sbjct 13304762 TGCTGACAAAGATGAAGGAAATTGCAGAAGCT--TATCTTGGG-AAGACTGTTACCAATG 13304706
Query 474738 CAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGG 474797
| || | |||| ||||| || |||||||| ||||| |||| ||||| |||| ||| |
Sbjct 13304705 CTGTGGTCACTGAGCCAGCTTACTTTAATGACTCTCAGTGTCAGGCAACCAAAGTTGCTG 13304646
Query 474798 GAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTG 474857
||| ||||| ||||||||||| || | ||||| ||||| |||||||| || || |||
Sbjct 13304645 GAAACATTGCTGGTCTTAATGTATTTAGAATTATCAATGAGCCAACAGCTGCTGCTGTTG 13304586
Query 474858 CTTATGGTCTTGATAAGAA 474876
| ||||| || || || ||
Sbjct 13304585 CCTATGGCCTAGACAAAAA 13304567
>seq3114
Length=26790417
Score = 136 bits (150), Expect = 3e-26
Identities = 353/532 (66%), Gaps = 11/532 (2%)
Strand=Plus/Minus
Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392
|||| | |||| | || || || ||| ||||| | ||| | || |||| ||||| |
Sbjct 7928174 TTGGCACTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAAGTGG 7928115
Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452
| || ||||||||||| || | ||| ||| || ||| ||||| ||| ||||| |
Sbjct 7928114 AGATCATTGCCAATGATCATAGAAATTGAATCACCCCAAGTTATGTCGTTTTCACTGACA 7928055
Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512
| || | | |||||| ||||| ||| ||||| ||| || || | |||||
Sbjct 7928054 CCAAA----TGACTGGAGACGCTGCAAAAAATCAAATAGCAATGAACCCCATCAATACAG 7927999
Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572
|||||||||| || ||||||| ||| ||||||||| | |||||| |||||||
Sbjct 7927998 TTTTTGATGCCAAGTATCTGATTGGATGTAGATTTGATGATGCTGTTGTCCAGTCTGATA 7927939
Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAATAC 474632
|| | | |||| || | |||| | || || || | || | | ||| | |
Sbjct 7927938 TGAAGCGTCGGCCCTTCATGGTGGTGAACAATGCAGGCAGGCCCAAGGTTCAAGTAGAAT 7927879
Query 474633 ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTC-TTCAATGGTTTTAGCCAAA 474691
|| ||| || || | || | || || | | || || |||| | | ||
Sbjct 7927878 ACAAAGGAGAGACGAGC---TTCTATCCAGAGGAGGTGTCATTTTTTGGTGCTGACAAAG 7927822
Query 474692 ATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGT 474750
|||| ||| | | || | |||||||| | || || |||| || |||||||
Sbjct 7927821 GTGAAGGAAATCACAGAAATT-TATCTTGGGAACACTGTTACCAATGCTGTGGTTACTGT 7927763
Query 474751 TCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGG 474810
||||| || |||||||||||||| | ||| ||||| | |||||| |||| ||||| ||
Sbjct 7927762 GCCAGCTTACTTTAATGATTCTCAGCATCAGGCAACCACAGATGCTGGAACTATTGCTGG 7927703
Query 474811 TCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862
||||||||| | | ||||| ||| || ||||||| || || |||| |||
Sbjct 7927702 TCTTAATGTACTTAGAATTATCAAT-AAGCAACAGCTGCTGCTATTGCCTAT 7927652
>seq3133
Length=50759066
Score = 129 bits (142), Expect = 4e-24
Identities = 319/478 (67%), Gaps = 12/478 (3%)
Strand=Plus/Minus
Query 475698 ATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCAT 475757
|||| ||||||||||| || || || || ||||||| || || || || || |
Sbjct 19048389 ATGAGATTGTTCTTGTTGGTGGCTCCACTCGAATTCCCAAGATCCAGCAACTGGTTAAAG 19048330
Query 475758 CATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATG 475817
| || ||||| || || | || | |||| || ||||| ||||| || ||||
Sbjct 19048329 AGTTCTTCAATGGCAAGGAGCCATCTGGTGGCATAAACCCAGATGAGGCTGTAGCCTATG 19048270
Query 475818 GAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTG 475877
| ||||||||||| | || | | | || || | ||| ||| || | | | |
Sbjct 19048269 GTGCTGCTGTCCAGGTAGGTGTACTCTCCAGTGA-TCA----AGATACAGGAGACC-TGG 19048216
Query 475878 TACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTA 475937
|||| || | ||| || || || | || ||||||| || ||||| | ||||| |
Sbjct 19048215 TACTGCTTAATGTACGTCT--TTACACTTGGCATTGAAACTGTGGGAGGTGTCATGACCA 19048158
Query 475938 ATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATT 475997
| || ||| ||||| ||| |||| ||| || || || | |||||||| ||
Sbjct 19048157 AACTGATTCCAAGAAACACTGTAGTCCCTACCAAGAAGTCTCAAATCTTTTCCACAGCTT 19048098
Query 475998 CTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTC--ACTAA 476055
||||||||||| ||||| | || ||| || ||| ||||| | ||| || || || ||
Sbjct 19048097 CTGATAATCAACCAACTATTACAATCAAAGTCTATGAAGAT--AAGCAACCTCTGACAAA 19048040
Query 476056 AGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGT 476115
||| || || || || | ||| | ||| || ||||||||||||||| || ||
Sbjct 19048039 AGACAACCACCTCCTGGGTATGTTTGACCTTACTGGAATTCCTCCTGCTCCCCATGGGGT 19047980
Query 476116 TCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173
| || || ||||| |||||||| | |||| ||||| |||||| |||| || |||
Sbjct 19047979 CTCCCAGATAGAAGTCACTTTTGAGACAGATGTGAATGGCATTCTTCATGTGACAGCT 19047922
>seq3129
Length=43247874
Score = 129 bits (142), Expect = 4e-24
Identities = 366/561 (65%), Gaps = 40/561 (7%)
Strand=Plus/Plus
Query 474381 ATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTT 474440
|||| ||||| || |||||||||||||| || || ||| ||| || ||| |||||
Sbjct 28182738 ATGGAAAAGTGGAGATAATTGCCAATGATCAGGGAAATCAAACCACTCCAAGTTATGTCG 28182797
Query 474441 CTTTTACTGAA--------------ACTG---AACATCTTATTGGAGATGCTGCTAAATA 474483
|||| ||| || |||| |||| || || |||||||||| ||| |
Sbjct 28182798 CTTTCACTAAAGATTGATCAGAGATACTGCAAAACAACTCATCAGAGATGCTGCAAAAAA 28182857
Query 474484 TCAAGCTGCATCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTA- 474542
||||| ||| || || || || ||||||||| ||| ||||||| ||||
Sbjct 28182858 TCAAGTGGCAGTGAACCCCACCAACACAGCTTTTGATGCCAAACATCTGATTGGACGTAG 28182917
Query 474543 --ATTTTGATGATACCACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAA 474600
|| ||||||| | | |||||| |||| | || |||||||| |||| |||| | ||
Sbjct 28182918 ATATGATGATGATGCTATTGTCCAGTCTGGTGTGAAGCATTGGCCCTTTATGGTGGTGAA 28182977
Query 474601 TGTTGGTGGTAAACCATATATAGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACC 474660
|| || || | || | | ||| | | || || |||| | ||| ||
Sbjct 28182978 TGATGCAGGCAGGCCCAAGGTTCAAGTAGAATACAGAGA-GAAAG------AGTTTGTCC 28183030
Query 474661 GGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGG 474720
|| | | ||||| | || | | || |||| |||| || | | ||||||||
Sbjct 28183031 AGAGAAGGTGTCTTCTACAGTGCTGACAAAGGTGAAGGAAACTGCAGACGCGTATCTTGG 28183090
Query 474721 ACAAGAA-GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTC 474779
|||| || || |||| || |||||| ||||| || |||||||| ||||| ||||
Sbjct 28183091 G-AAGACTGTTACCAATGCTGTGGTTACTGGGCCAGCTTACTTTAATGACTCTCAGCGTC 28183149
Query 474780 AAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAAC 474839
| | ||| |||||||| |||| ||||| ||||||||||| | | ||||| ||||
Sbjct 28183150 AGG-AACCAAAGATGCTGGAACCATTGCTGGTCTTAATGTACTTGGAATTATCAATG--- 28183205
Query 474840 CAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTT 474899
||| || |||||||||| | || || || || ||| ||||||
Sbjct 28183206 -------AGCTGCTATTGCTTATGGCTTAGACAAAAAGGTTGGAGTTGAAAGAAATGTAC 28183258
Query 474900 TAATCTTTGATTGTGGAGGTA 474920
| || ||||||| |||||||
Sbjct 28183259 TGATTTTTGATTTAGGAGGTA 28183279
>seq3124
Length=37078832
Score = 109 bits (120), Expect = 4e-18
Identities = 102/130 (78%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || ||||||| ||||| ||||||||||| ||||| || || || || |||||||
Sbjct 25401453 ATGCTGTGGTTACTGTGCCAGCTTATTTTAATGACTCTCAGCGCCAGGCTACCAAAGATG 25401512
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| || | ||||| ||||||||||| | | ||||| ||||| |||||||| || ||
Sbjct 25401513 CTGGGACCATTGCTGGTCTTAATGTACTTAGAATTATCAATGAGCCAACAGCTGCTGCTA 25401572
Query 474855 TTGCTTATGG 474864
|||| |||||
Sbjct 25401573 TTGCCTATGG 25401582
Score = 93.3 bits (102), Expect = 3e-13
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392
|||| |||||| | || || || ||| ||||| | ||| | || |||| || || |
Sbjct 25400711 TTGGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAGGTGG 25400770
Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452
| || ||||||||||| || || ||| |||| || ||| ||||| |||| ||||| |
Sbjct 25400771 AGATCATTGCCAATGATCAGGGAAATCGAACCACTCCAAGTTATGTCGCTTTCACTGACA 25400830
Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488
| |||| || ||||| |||||||| ||| | ||||
Sbjct 25400831 CCGAACGACTGATTGGGGATGCTGCAAAAAACCAAG 25400866
Score = 89.7 bits (98), Expect = 3e-12
Identities = 90/117 (77%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 290842 AGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATC 290901
||| |||||||| ||||| |||||||| | ||||| |||||| ||||| | | | |||
Sbjct 25401568 AGCAGCTGTTGGCTCATTGATAATTCTAAGTACATTAAGACCAGCAATGGTCCCAGCATC 25401509
Query 290902 TAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCTTT 290958
| || |||||||| || | |||||||||||||| || || |||| ||||| ||
Sbjct 25401508 TTTGGTAGCCTGGCGCTGAGAGTCATTAAAATAAGCTGGCACAGTAACCACAGCATT 25401452
Score = 89.7 bits (98), Expect = 3e-12
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110
|| || || || ||| ||||| | ||| | || ||| || |||||||| ||| |
Sbjct 25402872 ACCAAGGACAACAACCTGCTTGGCAAGTTTGAACTGACAGGCATACCTCCTGCACCCCGT 25402931
Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170
|| |||||||| ||||| || ||||||||||||||||| |||||||| || ||||| ||
Sbjct 25402932 GGTGTTCCTCAGATTGAGGTCACTTTTGATATTGATGCCAATGGTATCCTCAATGTCTCT 25402991
Query 476171 GC 476172
||
Sbjct 25402992 GC 25402993
>seq3143
Length=88675666
Score = 95.1 bits (104), Expect = 8e-14
Identities = 92/117 (79%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805
||||| ||||| ||||| ||||| | ||| | ||| ||||| |||||||| | || |||
Sbjct 45737991 ACTGTACCAGCTTATTT-AATGACTTTCAGCATCAGGCAACCAAAGATGCTGAAACCATT 45737933
Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862
|| ||||||| ||| | | ||||| |||||||||||||| || || ||||||||
Sbjct 45737932 GCTGGTCTTATTGTACTCAGAATTATCAATGAACCAACAGCTGCTGCTATTGCTTAT 45737876
>seq3099
Length=15920349
Score = 93.3 bits (102), Expect = 3e-13
Identities = 271/407 (67%), Gaps = 13/407 (3%)
Strand=Plus/Plus
Query 474464 ATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGATGCT 474523
|||||||||| | | ||| |||||| ||| || || || || ||||||||||
Sbjct 2306389 ATTGGAGATGTTACAAAAAATCAAGTGGCAATGAACCCCACCAACACAGTTTTTGATGCC 2306448
Query 474524 AAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCATTGG 474583
|| | | ||||| ||| ||| |||| | |||||| ||||||||| || |||
Sbjct 2306449 AAGTGTCTTATTGGATGTAGGTTTAGTGATGCTGTTGTCCAGTCTGATATGAAGCACTGG 2306508
Query 474584 CCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AGAAGCAATACACGCAGGTG 474641
|| || | | || ||||| || | | | | | || || |||||| || |
Sbjct 2306509 CCCTTCATGATGGCAAATGATGCAGCTGGCCTAGGGCTCAAGTAG-AATACAA--AGAAG 2306565
Query 474642 AAACTAAACAATTT-TCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAA 474700
| || ||| ||| | | || || | | || || ||||| | | || ||||| ||
Sbjct 2306566 AGAC-AAAGAATGTCTTTCCAGAGGACGTATCATCTATGGTGCTGACAAAGATGAAGGAA 2306624
Query 474701 ACCGCG--AGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTAATTACTGTTCCAGCA 474757
|| | |||| |||||||| |||| || | ||| ||| ||||||| |||||
Sbjct 2306625 ACTGAAGAAGCT--TATCTTGGG-AAGACTGTTATCATTGCTGTAGTTACTGTGCCAGCT 2306681
Query 474758 TATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAAT 474817
|| |||||||| ||| | ||| ||||| ||| |||| | | ||||| |||||||||
Sbjct 2306682 TACTTTAATGACCGTCATCATCAGGCAACCAAAAATGCTGCAGCCATTGCTGGTCTTAAT 2306741
Query 474818 GTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864
|| | | ||||| ||||| ||||||| || || |||| |||||
Sbjct 2306742 GTACTTAGAATTATCAATGAGCCAACAGATGCTGCTATTGCCTATGG 2306788
>seq3063
Length=7952490
Score = 91.5 bits (100), Expect = 1e-12
Identities = 110/148 (74%), Gaps = 4/148 (3%)
Strand=Plus/Minus
Query 480564 ACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTT 480621
|||||||| || || ||| |||| || || ||||||| | ||| | |||||
Sbjct 5877711 ACAAGATGGAGAGTGGACTCCCTTTG--AATGTTGTAATCAGACAAAGTGCATCCATCTT 5877654
Query 480622 CAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTT 480681
| |||||||| ||| |||| || || | ||| ||||||||||||||||||||||| ||||
Sbjct 5877653 CCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCTT 5877594
Query 480682 GAATCTTTTGTTTGACAGCTTCAATAGT 480709
| ||||| || ||| ||| |||||
Sbjct 5877593 GGATCTTGGCCTTTACATTTTCTATAGT 5877566
>seq3134
Length=59225736
Score = 89.7 bits (98), Expect = 3e-12
Identities = 174/256 (68%), Gaps = 2/256 (1%)
Strand=Plus/Plus
Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392
|||| |||||| | || ||| | ||| |||||| | ||| | || | | ||||| |
Sbjct 50879536 TTGGCATTGATCTTGGCACTGCCTACTCTTGTGTGGGTGTCTTCCAGCACTGAAAAGTGG 50879595
Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452
| ||||| ||||||| || || ||| |||| | ||| ||| | |||| | | |
Sbjct 50879596 AGATAAT--CCAATGATCAGGGAAATTGAACTATTCCAAGTTATACTGCTTTCGCCAACA 50879653
Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512
|| |||| || |||||||||||||| ||| |||||| || | || || || ||
Sbjct 50879654 CTAAACAACTGATTGGAGATGCTGCAAAAAATCAAGTGACAACGAACCCAACCAACACAG 50879713
Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572
|||| |||| || | ||||| ||| ||| ||||| | ||| || |||||||
Sbjct 50879714 TTTTCAATGCCAAGCATCTTATTGGATGTAGCTTTTATGATGCTGTTGTTCAGTCTGATA 50879773
Query 474573 TGCGTCATTGGCCTTT 474588
|| |||||||| ||
Sbjct 50879774 TGAAGCATTGGCCCTT 50879789
Score = 87.8 bits (96), Expect = 1e-11
Identities = 189/280 (68%), Gaps = 7/280 (3%)
Strand=Plus/Minus
Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387
|||| |||| |||||| || || || ||| ||||| | || | | || | ||
Sbjct 42150599 TGCAGTTGGCATTGATCGTGGCACCACCTACTTCTGTGTGGGCGTCTTCTATCATAGAAA 42150540
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
||| || ||||| ||| ||||| || ||| || | || ||| |||| | |||| ||
Sbjct 42150539 AGTGGAGATAATCACCAGTGACCCGGGAAATCGAGCCACTCCAAGTTATGCTGCTTTCAC 42150480
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507
||| ||| |||| | || ||||||||||| | | |||||| ||| || || |
Sbjct 42150479 TGACACTCAACAATTGATCGGAGATGCTGCAAGACATCAAGTGGCAAGGAACCCCACCA- 42150421
Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTG--TCCAA 474565
| ||||||| ||| || |||||| | || | |||||| ||||| ||||
Sbjct 42150420 -GCAATTTTTGGTGCCAAGCATCAGATTGGACATAGATATGATGA---CACTGTTTCCAG 42150365
Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTG 474605
||||||||| |||||||| || | |||| | |||| ||
Sbjct 42150364 TCTGATATGAAGCATTGGCCCTTCACGGTGGTGAATGATG 42150325
>seq3061
Length=7642621
Score = 87.8 bits (96), Expect = 1e-11
Identities = 149/215 (69%), Gaps = 17/215 (8%)
Strand=Plus/Minus
Query 480561 AGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCT 480620
|| ||||||||||| || | || || || || ||||||| | ||| | ||||
Sbjct 2174629 AGCACAAGATGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCATCCATCT 2174570
Query 480621 TCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCT 480680
|| |||| | ||||||| || || | ||||||||||||||||||||||||||| ||
Sbjct 2174569 TCCAGTTAC----CAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTTATCC 2174514
Query 480681 TGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA------AGGGTA 480734
|| ||||| || ||| ||| | |||||| ||||| |||| |||||
Sbjct 2174513 TGGATCTTGGCCTTTACATTTTCTA------CAGTGTCTGAAGGTTCAGCCTTGAGGGTG 2174460
Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || || || || | |||||| ||
Sbjct 2174459 ATGGTCTTTCCTGTAAGGGT-TTTATGAAAATCTG 2174426
>seq2997
Length=2481227
Score = 87.8 bits (96), Expect = 1e-11
Identities = 98/127 (77%), Gaps = 3/127 (2%)
Strand=Plus/Minus
Query 480564 ACAAGATGAAGTGT-ACTTTCTTTAGAAACATTATAATCAGCTAGAGTTC-TGTTATCTT 480621
||||||||||| || | | |||| ||| || ||| ||| | ||| | | |||||
Sbjct 411694 ACAAGATGAAGAGTGAACTCCTTTTGAATG-TTGTAACCAGACAAAGTACATCCAATCTT 411636
Query 480622 CAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTT 480681
| |||||||| |||||||| || || | ||| ||||||||||||||||||||||| || |
Sbjct 411635 CCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCT 411576
Query 480682 GAATCTT 480688
| |||||
Sbjct 411575 GGATCTT 411569
>seq3116
Length=27942054
Score = 86.0 bits (94), Expect = 4e-11
Identities = 116/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 475877 GTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACT 475936
||||| |||| ||| ||| ||| || | || ||||||| || ||||| | |||||
Sbjct 8944352 GTACTGCTTGATGTATGTCCCCTTACACTTGGCATTGAAACTGTGGGAGGTGTCATGACC 8944411
Query 475937 AATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTAT 475996
|| || ||| ||||| ||| |||| ||| || || | | |||||||| |
Sbjct 8944412 AAACTGATTCCAAGAAACACTGTAGTCCCTACCAAGAAGTCTCAGATCTTTTCCACAGCT 8944471
Query 475997 TCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGT 476038
|||||||||||| ||||||| || ||| || ||| |||||||
Sbjct 8944472 TCTGATAATCAACCAACTGTTACAATCAAAGTCTATGAAGGT 8944513
>seq3105
Length=21505965
Score = 86.0 bits (94), Expect = 4e-11
Identities = 144/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 480564 ACAAGATGA--AGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTT 480621
||||||||| |||| || | |||| | || || ||||||| | ||| | |||||
Sbjct 7417354 ACAAGATGAAGAGTGGAC-TCCTTTTG-AATGTTGTAATCAGACAAAGTACGTCCATCTT 7417411
Query 480622 CAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTT 480681
| ||||| | ||||||| || || | ||| ||||||||||||||||||||||| || |
Sbjct 7417412 CCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCT 7417471
Query 480682 GAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTT 480741
| ||||| || ||| ||| ||||| || | || ||| || || | || || |
Sbjct 7417472 GGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTCGTGGATGATGGTCT 7417531
Query 480742 TACCGGTGAGAGTCTTAACGAAAAT 480766
| || || | || || || |||||
Sbjct 7417532 TCCCTGTAAAGGTTTTTACAAAAAT 7417556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268044338585312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |