Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq3122 329 4e-85 seq3108 140 4e-28 seq3042 129 7e-25 seq3094 105 8e-18 >seq3122 Length=33939536 Score = 329 bits (364), Expect = 4e-85 Identities = 670/989 (68%), Gaps = 17/989 (2%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 || |||||||| || |||||||| |||| ||| || | ||| ||||| ||| || || Sbjct 27423664 TGCCGCAGATGCTCATCCAGACACTGGATGGCAAAGAGGTCGACGTCCATGTCAAACTTG 27423605 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | ||||| || | || ||||| || ||| || | || || | | Sbjct 27423604 TTGGCAAAAAAGTGGTGT---TTGCGCAGCATCCACGTCAAGTCCCCAGCTCCAAAAATG 27423548 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || ||| |||| || || || | || || || || | || || || || ||| Sbjct 27423547 CACACGCTGCGTACATGGACCCCATCACACGGGGGATAGGGCGCGCCCTTGTTCAGGTCC 27423488 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 ||||| |||||||||||| || |||||||| | ||||||||||| || |||||| Sbjct 27423487 CCTTCAAGGTACTGCCACTTGACGAACCTGGCCACGGCCTGCATGTCAGATAGGTCGTAC 27423428 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 |||| ||||||| | || || || | | || || | || | |||||||| || Sbjct 27423427 TTGTGGTTCAGGGGCAGGGAGCCTGGGGCCTCAGGGATCCTTTGGATCGTGGCCCAGAGA 27423368 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT-TAACCTGTC 160405 | || || |||||||||||||| | | ||| |||||||||| | ||| | | | Sbjct 27423367 TACTCATCAGGGCTGTACGTGTCTTGTGCCCACTCCATGAACTTCCGGATGTCTTCATTT 27423308 Query 160406 CCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATAT 160465 | ||| || | || || ||| | || |||||||| ||||| || ||||| | Sbjct 27423307 TC-CAGCACATAGCCCACATACTCCCTGCTGACCACAAAGTAGGCGCTCCCTGAGAAAAG 27423249 Query 160466 CGGTAT---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 ||| | | | |||| |||| |||| || |||| | || | || | Sbjct 27423248 AGGTGTTTTGAGCGGAGGCTGCGT---TTTGGGGGTCCCCGTGTCTGTCAGCTTCCCGTC 27423192 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTC 160582 || | || | || |||||||||| | ||||| | |||||| |||||||| Sbjct 27423191 GACAACTGCATAGTGCCTCTTCCACCTTTCTGCTTTGTGGGATGGCATCTTCTCCGTCTC 27423132 Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642 |||||||| |||| || ||| || |||| | |||| || || ||||| || || | Sbjct 27423131 CAGACTGTTTTCACCCATGAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAAT 27423072 Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702 ||||| || | || || | ||| |||| ||||||||| | |||||||| || || Sbjct 27423071 GGGAAAATCCATCCCACAAAGGTTGATCAGGTACTTCCAGTCCGCGCTCATTCTGTAGAG 27423012 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 |||| ||||||| || | || |||||||| |||||||| || ||||| || ||| |||| Sbjct 27423011 GTCCTTCATGCAGTTCAGGTCAGCCTGCACCCGGCTCCACGATGCGTAGACCACGCTCTC 27422952 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAG 160819 || | ||||||||||||||| || |||||| ||| |||| || |||| | || | Sbjct 27422951 CAGCTGACTGGCCACAAAGACATTCCTGAAACAGGACGCGATGCCTTTCACCGCGGCTAT 27422892 Query 160820 AAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879 ||| | ||| | |||| |||||| || | |||||| | ||||||||| || Sbjct 27422891 GAAGGAGTCCTT---TGATTTTCTGTCCACATGGATGCAATAGAAATTCTGAGGCATATA 27422835 Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939 |||||||| || | ||| || | |||||| || || ||||||| ||| || ||||| || Sbjct 27422834 AATGGCCCTTAGAAGCCTGTCAAGCATCTCGATTTTGTGATGGACCACTATGGAGTACGC 27422775 Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGAT 160999 ||||| || | | |||||| || |||| | || | ||| || ||| ||||||| Sbjct 27422774 AATCGGGAAGCCTGCCTCCTCTTTGCTAAGGGGTTCCGTGATGTATTTGCGCATCTTGAT 27422715 Query 161000 AAAATAATCACAATCCCGCGTCATGTTGA 161028 || | || |||| |||||||||| Sbjct 27422714 GAAGGAGGTGCAGTCCCTGGTCATGTTGA 27422686 >seq3108 Length=23989115 Score = 140 bits (154), Expect = 4e-28 Identities = 224/322 (70%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 168148 CGTATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGC 168207 |||| || || | ||| ||| |||| || ||||| || | || || || |||||||| | Sbjct 13844856 CGTAGAGGGTAAGGCAGGTTGTTCCTGAGATCTTCCCAGCGCCAAAGGTATTGAAGAGAC 13844797 Query 168208 ACATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGA 168267 ||||| | || ||||| ||||||| || | |||||| || || | | ||| || | | Sbjct 13844796 ACATGTAACACCCTTCATCCTCCAGTGTTGCATTCCAGAAGGTGATGGCTGACTTCTGCA 13844737 Query 168268 GGCCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGT 168327 |||| || || ||||||| | ||| |||| ||||| || || ||||| || || | Sbjct 13844736 ATCCCACCTCGGTGATGTTCATCCTATCCATATAGGGAGGCTGGACCACAACCCCATGTT 13844677 Query 168328 TCTCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTA 168387 ||| ||| ||||||||||||| || ||||| | |||| | || ||||| || || | Sbjct 13844676 TCTTACTGTAGGTGGCCATGTTTTCTGGGCTTATATCCTTCTTTTTTTGCCATGTCACAA 13844617 Query 168388 TCAGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTT 168447 | | | ||| | |||| |||||||||| || || || ||||||||| | | Sbjct 13844616 TTAAGGCTTCTAAGGAAGATTGCAAAGAACATCTCAAGGATGCAGGTGTGTTCAGCGGCT 13844557 Query 168448 CTCGCTCATCTTGAGTTACGAC 168469 | ||||| || || || || Sbjct 13844556 TGCTTTCATCCTGGGTCACCAC 13844535 Score = 138 bits (152), Expect = 1e-27 Identities = 149/197 (76%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 167906 TCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTT 167965 |||||| || || |||| ||| |||||||| || || || |||||||| | |||||| Sbjct 13846617 TCCCAAGTGCAGGACCTGGCAGATCACCTCC---TTCCCAACCTGACTCTTGGCATCTTT 13846561 Query 167966 TACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCT 168025 || || | ||||||||| ||| ||| || ||||| |||| ||||| | | ||| | Sbjct 13846560 GACGTGGAGAATGCTAGTGACAGATGTGGTGCCATTAGGATGCAAAACACTCTCAGTGGT 13846501 Query 168026 GTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGC 168085 |||||||||||||| || || ||||||||| | || ||||| || || || || || || Sbjct 13846500 ATTCTCAATCCCTGACCCAGCAACCTTCCAGGAGATCACAGGGGCCGGGCGGGCAGTGGC 13846441 Query 168086 AGAGCAGGTAATATTTA 168102 |||||| || || |||| Sbjct 13846440 AGAGCAAGTGATGTTTA 13846424 >seq3042 Length=4956042 Score = 129 bits (142), Expect = 7e-25 Identities = 568/883 (64%), Gaps = 22/883 (2%) Strand=Plus/Minus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || |||||||||||| ||||| || |||||||||| ||| |||| Sbjct 2815833 GTCAAACTTGTTGGCCAACAGATGGTGA---TTCTGCAGCATCCAGTGCAGGTCCCCGGC 2815777 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | | ||||| || || ||| || || |||||| || | || || | Sbjct 2815776 CCCATAAATGCAGATGGCCCGCCGGTGGACCCCAGAGCAAGGTCCATAAGGTGCCCCCTG 2815717 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | |||||| || | | ||||||||| || | |||||| || || |||||| || Sbjct 2815716 GCTGATGTCACCCTCATGTTGCTGCCACTTGACCAGCCTGGCAATGGCGGTCATGTCCGA 2815657 Query 160277 GGTGTCGTATTTGTACAT-CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGG 160335 | |||| || ||| ||| || ||| | ||||| | | ||| ||||| |||| Sbjct 2815656 GATGTCATACTTGG-CATGCAAGGGCGAAGAGCCGGGCATCCAGGGGGCCCGCTGGAGGG 2815598 Query 160336 TGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT-CTCCG 160394 ||||||| || |||||||| || ||||| ||||| || |||||| || | || || | Sbjct 2815597 TGGCCCAGAGATGTTCGTCAGGACTGTAGGTGTCTTTCACCCATTCGATCAGCTGCTGGG 2815538 Query 160395 ATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTG 160454 ||| | || || |||||| ||| || | | | |||| ||| || || Sbjct 2815537 ATTTA-GGGTTATTTAGGACGTGATGGACGAAGTCCCGAGAAGCCACAATGTAGGCATTG 2815479 Query 160455 CCGGAGAATATCGGTATG-GGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACAC 160513 |||| ||| || | || | ||| ||| || | || || | || | ||| | ||| Sbjct 2815478 CCGGTGAACATGGTTACGTTGTA-AGGGGGAGGCTCCTTCTTCTTGCTGGTTATGTACAA 2815420 Query 160514 CACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGT--GCGGTGGCATG 160571 | | ||||||| ||| | | ||||| | | | |||| || ||| | Sbjct 2815419 CTTGTCCTTCACCA---CGTAGTGATATTTCCATCGGGTTTTTTTGTACTCGCTGG--GG 2815365 Query 160572 CGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGG 160631 ||| | ||| | ||||| |||| | | |||| | ||| ||||| | Sbjct 2815364 ATTTCTGACTCCATGCTGTTCTTCCCGTTCAACATCCTCAGGGCCCGGACCATCTCAGCG 2815305 Query 160632 TTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTC 160691 || ||||| | |||||||| || || || || | || ||| |||| ||| || Sbjct 2815304 TTGGTCTTTATGGGAAAGTCTGTCCCACAGGTATTCAGCAAGTAGGTCCA--CCGCACTG 2815247 Query 160692 AGGTC--GTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGT 160749 | || | ||| |||| |||||| || | || |||||||| | | |||||| |||| Sbjct 2815246 GGCTCCGGAGCAAGTCCTCCATGCAGTTCAGGTCAGCCTGCACCCTGGACCAGGAGGCGT 2815187 Query 160750 ACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA 160809 | || ||| | || || ||||| | ||||| || ||| || || |||| || Sbjct 2815186 AAACCACGGGAACCAGCTTGCTGGCTATGAAGACATTTGGGAAGCAGGAAGCGATCGCCC 2815127 Query 160810 CCACCGCCAGAAAGAACATCTTATCCGCCTTTC-GGTCCACGTGCACGCAATACAGGTTC 160868 || ||| |||||| || | |||| ||||||||| | || |||| ||| Sbjct 2815126 TGACTGCCTCTTGGAACAT-TTCTGGAGATTTCTTGTCCACGTGGATACAGTACACATTC 2815068 Query 160869 TGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACG 160928 || ||| ||| | || | |||| |||||| || |||| || || | ||| | ||| Sbjct 2815067 TGTGGCATGTACACAGCTCGCAGCAGCCTCTCAAAGTTCTCGATTTTCTCATGAACCACC 2815008 Query 160929 ATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGG 160971 |||||||| || || || || || | |||||| ||||||| Sbjct 2815007 ATAGAGTACGCGATGGGGAAGTCTGACTCCTCTTTGCTCAGGG 2814965 >seq3094 Length=14016002 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 176235 TATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGA 176294 || ||| |||| |||| || |||| ||| || | ||||| || || | || || ||| Sbjct 9616927 TACTTTGCTAGCTCACTGGGAGAGTTATAGTCTTCTACATGAATGAAAGAGTCTGCCGGA 9616868 Query 176295 ATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAAT 176354 || || |||||||| |||| ||||| ||||| | ||| | ||||| | | || || Sbjct 9616867 ATATAATTTTCATAGTTTTCCCTGGATGGTCCCAGAACAACAGGTACAGATCCAGCCAAG 9616808 Query 176355 AATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAA 176414 || | |||| |||||||| ||||| || ||||||||||||||||||||| | | Sbjct 9616807 AAAGCATTATAGAGCTTTTCTGTTATGTAATCTTTGTGAATTGAGTTTTCAAAAGAGAGA 9616748 Query 176415 TAGAACTTACA 176425 || || ||||| Sbjct 9616747 TAAAATTTACA 9616737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577196515285440