Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq3122 329 4e-85
seq3108 140 4e-28
seq3042 129 7e-25
seq3094 105 8e-18
>seq3122
Length=33939536
Score = 329 bits (364), Expect = 4e-85
Identities = 670/989 (68%), Gaps = 17/989 (2%)
Strand=Plus/Minus
Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106
|| |||||||| || |||||||| |||| ||| || | ||| ||||| ||| || ||
Sbjct 27423664 TGCCGCAGATGCTCATCCAGACACTGGATGGCAAAGAGGTCGACGTCCATGTCAAACTTG 27423605
Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166
|| || || | ||||| || | || ||||| || ||| || | || || | |
Sbjct 27423604 TTGGCAAAAAAGTGGTGT---TTGCGCAGCATCCACGTCAAGTCCCCAGCTCCAAAAATG 27423548
Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226
|| ||| |||| || || || | || || || || | || || || || |||
Sbjct 27423547 CACACGCTGCGTACATGGACCCCATCACACGGGGGATAGGGCGCGCCCTTGTTCAGGTCC 27423488
Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286
||||| |||||||||||| || |||||||| | ||||||||||| || ||||||
Sbjct 27423487 CCTTCAAGGTACTGCCACTTGACGAACCTGGCCACGGCCTGCATGTCAGATAGGTCGTAC 27423428
Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346
|||| ||||||| | || || || | | || || | || | |||||||| ||
Sbjct 27423427 TTGTGGTTCAGGGGCAGGGAGCCTGGGGCCTCAGGGATCCTTTGGATCGTGGCCCAGAGA 27423368
Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT-TAACCTGTC 160405
| || || |||||||||||||| | | ||| |||||||||| | ||| | | |
Sbjct 27423367 TACTCATCAGGGCTGTACGTGTCTTGTGCCCACTCCATGAACTTCCGGATGTCTTCATTT 27423308
Query 160406 CCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATAT 160465
| ||| || | || || ||| | || |||||||| ||||| || ||||| |
Sbjct 27423307 TC-CAGCACATAGCCCACATACTCCCTGCTGACCACAAAGTAGGCGCTCCCTGAGAAAAG 27423249
Query 160466 CGGTAT---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522
||| | | | |||| |||| |||| || |||| | || | || |
Sbjct 27423248 AGGTGTTTTGAGCGGAGGCTGCGT---TTTGGGGGTCCCCGTGTCTGTCAGCTTCCCGTC 27423192
Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTC 160582
|| | || | || |||||||||| | ||||| | |||||| ||||||||
Sbjct 27423191 GACAACTGCATAGTGCCTCTTCCACCTTTCTGCTTTGTGGGATGGCATCTTCTCCGTCTC 27423132
Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642
|||||||| |||| || ||| || |||| | |||| || || ||||| || || |
Sbjct 27423131 CAGACTGTTTTCACCCATGAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAAT 27423072
Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702
||||| || | || || | ||| |||| ||||||||| | |||||||| || ||
Sbjct 27423071 GGGAAAATCCATCCCACAAAGGTTGATCAGGTACTTCCAGTCCGCGCTCATTCTGTAGAG 27423012
Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762
|||| ||||||| || | || |||||||| |||||||| || ||||| || ||| ||||
Sbjct 27423011 GTCCTTCATGCAGTTCAGGTCAGCCTGCACCCGGCTCCACGATGCGTAGACCACGCTCTC 27422952
Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAG 160819
|| | ||||||||||||||| || |||||| ||| |||| || |||| | || |
Sbjct 27422951 CAGCTGACTGGCCACAAAGACATTCCTGAAACAGGACGCGATGCCTTTCACCGCGGCTAT 27422892
Query 160820 AAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879
||| | ||| | |||| |||||| || | |||||| | ||||||||| ||
Sbjct 27422891 GAAGGAGTCCTT---TGATTTTCTGTCCACATGGATGCAATAGAAATTCTGAGGCATATA 27422835
Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939
|||||||| || | ||| || | |||||| || || ||||||| ||| || ||||| ||
Sbjct 27422834 AATGGCCCTTAGAAGCCTGTCAAGCATCTCGATTTTGTGATGGACCACTATGGAGTACGC 27422775
Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGAT 160999
||||| || | | |||||| || |||| | || | ||| || ||| |||||||
Sbjct 27422774 AATCGGGAAGCCTGCCTCCTCTTTGCTAAGGGGTTCCGTGATGTATTTGCGCATCTTGAT 27422715
Query 161000 AAAATAATCACAATCCCGCGTCATGTTGA 161028
|| | || |||| ||||||||||
Sbjct 27422714 GAAGGAGGTGCAGTCCCTGGTCATGTTGA 27422686
>seq3108
Length=23989115
Score = 140 bits (154), Expect = 4e-28
Identities = 224/322 (70%), Gaps = 0/322 (0%)
Strand=Plus/Minus
Query 168148 CGTATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGC 168207
|||| || || | ||| ||| |||| || ||||| || | || || || |||||||| |
Sbjct 13844856 CGTAGAGGGTAAGGCAGGTTGTTCCTGAGATCTTCCCAGCGCCAAAGGTATTGAAGAGAC 13844797
Query 168208 ACATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGA 168267
||||| | || ||||| ||||||| || | |||||| || || | | ||| || | |
Sbjct 13844796 ACATGTAACACCCTTCATCCTCCAGTGTTGCATTCCAGAAGGTGATGGCTGACTTCTGCA 13844737
Query 168268 GGCCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGT 168327
|||| || || ||||||| | ||| |||| ||||| || || ||||| || || |
Sbjct 13844736 ATCCCACCTCGGTGATGTTCATCCTATCCATATAGGGAGGCTGGACCACAACCCCATGTT 13844677
Query 168328 TCTCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTA 168387
||| ||| ||||||||||||| || ||||| | |||| | || ||||| || || |
Sbjct 13844676 TCTTACTGTAGGTGGCCATGTTTTCTGGGCTTATATCCTTCTTTTTTTGCCATGTCACAA 13844617
Query 168388 TCAGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTT 168447
| | | ||| | |||| |||||||||| || || || ||||||||| | |
Sbjct 13844616 TTAAGGCTTCTAAGGAAGATTGCAAAGAACATCTCAAGGATGCAGGTGTGTTCAGCGGCT 13844557
Query 168448 CTCGCTCATCTTGAGTTACGAC 168469
| ||||| || || || ||
Sbjct 13844556 TGCTTTCATCCTGGGTCACCAC 13844535
Score = 138 bits (152), Expect = 1e-27
Identities = 149/197 (76%), Gaps = 3/197 (2%)
Strand=Plus/Minus
Query 167906 TCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTT 167965
|||||| || || |||| ||| |||||||| || || || |||||||| | ||||||
Sbjct 13846617 TCCCAAGTGCAGGACCTGGCAGATCACCTCC---TTCCCAACCTGACTCTTGGCATCTTT 13846561
Query 167966 TACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCT 168025
|| || | ||||||||| ||| ||| || ||||| |||| ||||| | | ||| |
Sbjct 13846560 GACGTGGAGAATGCTAGTGACAGATGTGGTGCCATTAGGATGCAAAACACTCTCAGTGGT 13846501
Query 168026 GTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGC 168085
|||||||||||||| || || ||||||||| | || ||||| || || || || || ||
Sbjct 13846500 ATTCTCAATCCCTGACCCAGCAACCTTCCAGGAGATCACAGGGGCCGGGCGGGCAGTGGC 13846441
Query 168086 AGAGCAGGTAATATTTA 168102
|||||| || || ||||
Sbjct 13846440 AGAGCAAGTGATGTTTA 13846424
>seq3042
Length=4956042
Score = 129 bits (142), Expect = 7e-25
Identities = 568/883 (64%), Gaps = 22/883 (2%)
Strand=Plus/Minus
Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156
||| || || || || |||||||||||| ||||| || |||||||||| ||| ||||
Sbjct 2815833 GTCAAACTTGTTGGCCAACAGATGGTGA---TTCTGCAGCATCCAGTGCAGGTCCCCGGC 2815777
Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216
||| | | ||||| || || ||| || || |||||| || | || || |
Sbjct 2815776 CCCATAAATGCAGATGGCCCGCCGGTGGACCCCAGAGCAAGGTCCATAAGGTGCCCCCTG 2815717
Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276
| |||||| || | | ||||||||| || | |||||| || || |||||| ||
Sbjct 2815716 GCTGATGTCACCCTCATGTTGCTGCCACTTGACCAGCCTGGCAATGGCGGTCATGTCCGA 2815657
Query 160277 GGTGTCGTATTTGTACAT-CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGG 160335
| |||| || ||| ||| || ||| | ||||| | | ||| ||||| ||||
Sbjct 2815656 GATGTCATACTTGG-CATGCAAGGGCGAAGAGCCGGGCATCCAGGGGGCCCGCTGGAGGG 2815598
Query 160336 TGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT-CTCCG 160394
||||||| || |||||||| || ||||| ||||| || |||||| || | || || |
Sbjct 2815597 TGGCCCAGAGATGTTCGTCAGGACTGTAGGTGTCTTTCACCCATTCGATCAGCTGCTGGG 2815538
Query 160395 ATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTG 160454
||| | || || |||||| ||| || | | | |||| ||| || ||
Sbjct 2815537 ATTTA-GGGTTATTTAGGACGTGATGGACGAAGTCCCGAGAAGCCACAATGTAGGCATTG 2815479
Query 160455 CCGGAGAATATCGGTATG-GGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACAC 160513
|||| ||| || | || | ||| ||| || | || || | || | ||| | |||
Sbjct 2815478 CCGGTGAACATGGTTACGTTGTA-AGGGGGAGGCTCCTTCTTCTTGCTGGTTATGTACAA 2815420
Query 160514 CACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGT--GCGGTGGCATG 160571
| | ||||||| ||| | | ||||| | | | |||| || ||| |
Sbjct 2815419 CTTGTCCTTCACCA---CGTAGTGATATTTCCATCGGGTTTTTTTGTACTCGCTGG--GG 2815365
Query 160572 CGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGG 160631
||| | ||| | ||||| |||| | | |||| | ||| ||||| |
Sbjct 2815364 ATTTCTGACTCCATGCTGTTCTTCCCGTTCAACATCCTCAGGGCCCGGACCATCTCAGCG 2815305
Query 160632 TTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTC 160691
|| ||||| | |||||||| || || || || | || ||| |||| ||| ||
Sbjct 2815304 TTGGTCTTTATGGGAAAGTCTGTCCCACAGGTATTCAGCAAGTAGGTCCA--CCGCACTG 2815247
Query 160692 AGGTC--GTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGT 160749
| || | ||| |||| |||||| || | || |||||||| | | |||||| ||||
Sbjct 2815246 GGCTCCGGAGCAAGTCCTCCATGCAGTTCAGGTCAGCCTGCACCCTGGACCAGGAGGCGT 2815187
Query 160750 ACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA 160809
| || ||| | || || ||||| | ||||| || ||| || || |||| ||
Sbjct 2815186 AAACCACGGGAACCAGCTTGCTGGCTATGAAGACATTTGGGAAGCAGGAAGCGATCGCCC 2815127
Query 160810 CCACCGCCAGAAAGAACATCTTATCCGCCTTTC-GGTCCACGTGCACGCAATACAGGTTC 160868
|| ||| |||||| || | |||| ||||||||| | || |||| |||
Sbjct 2815126 TGACTGCCTCTTGGAACAT-TTCTGGAGATTTCTTGTCCACGTGGATACAGTACACATTC 2815068
Query 160869 TGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACG 160928
|| ||| ||| | || | |||| |||||| || |||| || || | ||| | |||
Sbjct 2815067 TGTGGCATGTACACAGCTCGCAGCAGCCTCTCAAAGTTCTCGATTTTCTCATGAACCACC 2815008
Query 160929 ATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGG 160971
|||||||| || || || || || | |||||| |||||||
Sbjct 2815007 ATAGAGTACGCGATGGGGAAGTCTGACTCCTCTTTGCTCAGGG 2814965
>seq3094
Length=14016002
Score = 105 bits (116), Expect = 8e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 176235 TATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGA 176294
|| ||| |||| |||| || |||| ||| || | ||||| || || | || || |||
Sbjct 9616927 TACTTTGCTAGCTCACTGGGAGAGTTATAGTCTTCTACATGAATGAAAGAGTCTGCCGGA 9616868
Query 176295 ATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAAT 176354
|| || |||||||| |||| ||||| ||||| | ||| | ||||| | | || ||
Sbjct 9616867 ATATAATTTTCATAGTTTTCCCTGGATGGTCCCAGAACAACAGGTACAGATCCAGCCAAG 9616808
Query 176355 AATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAA 176414
|| | |||| |||||||| ||||| || ||||||||||||||||||||| | |
Sbjct 9616807 AAAGCATTATAGAGCTTTTCTGTTATGTAATCTTTGTGAATTGAGTTTTCAAAAGAGAGA 9616748
Query 176415 TAGAACTTACA 176425
|| || |||||
Sbjct 9616747 TAAAATTTACA 9616737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577196515285440
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