Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq3035 105 9e-18 >seq3035 Length=4563218 Score = 105 bits (116), Expect = 9e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 48074 CACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCT 48133 ||||||| || || || ||||||||||| |||||||| |||| ||| |||||||||||| Sbjct 4205595 CACCATAGGGTGACCGCGGATAGAAAGGGGTGGTCTCCTTCTGGGGAATCTCTTGCACCT 4205654 Query 48134 TACCATAAAGTTCACTGGTGGATGCTTGATAGA 48166 | |||||||||||||| ||||| || || |||| Sbjct 4205655 TCCCATAAAGTTCACTTGTGGAAGCCTGGTAGA 4205687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665468246070080