Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq3040 86.0 7e-12
>seq3040
Length=4637412
Score = 86.0 bits (94), Expect = 7e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 75876 TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGG 75935
||||| | || ||| || | || ||||| ||||| || || || || ||||| ||||| |
Sbjct 3943171 TTTGGTACGCCATTATCGAGTCTCAGACAGAGACGGGTACCCCGTACATGCTCTACAAAG 3943230
Query 75936 ATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTT 75995
|| | ||||| ||||| ||||| |||| ||||||||||||| || || || |
Sbjct 3943231 ATTCCTGTAATCGAAAGAGCAACCAGCAGAACCTGGGAACAATCAAATGCAGCAACCTGT 3943290
Query 75996 GCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030
|||| ||||| |||| || || || ||||||
Sbjct 3943291 GCACAGAAATAGTAGAATATACCAGCAAAGATGAG 3943325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596546154814720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |