Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3040 86.0 7e-12 >seq3040 Length=4637412 Score = 86.0 bits (94), Expect = 7e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 75876 TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGG 75935 ||||| | || ||| || | || ||||| ||||| || || || || ||||| ||||| | Sbjct 3943171 TTTGGTACGCCATTATCGAGTCTCAGACAGAGACGGGTACCCCGTACATGCTCTACAAAG 3943230 Query 75936 ATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTT 75995 || | ||||| ||||| ||||| |||| ||||||||||||| || || || | Sbjct 3943231 ATTCCTGTAATCGAAAGAGCAACCAGCAGAACCTGGGAACAATCAAATGCAGCAACCTGT 3943290 Query 75996 GCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 |||| ||||| |||| || || || |||||| Sbjct 3943291 GCACAGAAATAGTAGAATATACCAGCAAAGATGAG 3943325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596546154814720