Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 102 1e-16
>seq3106
Length=22756556
Score = 102 bits (112), Expect = 1e-16
Identities = 356/550 (65%), Gaps = 13/550 (2%)
Strand=Plus/Minus
Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217
|| || || ||| ||| | || ||||||||| || | ||| || ||| || |
Sbjct 217266 CAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGG 217207
Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277
|||||||| | || | ||| || ||||| || ||||| || ||| || |||||| ||
Sbjct 217206 CCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAG 217147
Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT 18337
|| || || ||| || || |||| | | ||| || || || | ||| |
Sbjct 217146 ATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCA 217087
Query 18338 ATCCATTTTTGTGCCCATTCTC-CTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396
||||| ||||| || ||| | ||| || || |||| || |||||
Sbjct 217086 ATCCAGCGCAAGGCCCAGTCCGACTTCTTC----ACACAGGGCATGGTCTCGATGGCATT 217031
Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456
|| | || ||||| |||||||||| |||||||| ||||| | | | |||||
Sbjct 217030 GAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGACTGTACAT 216971
Query 18457 TTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC-GGGAT 18515
||||||||| ||| ||||||| || ||||| || | || || | | |||||| | |||
Sbjct 216970 TTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGAT 216911
Query 18516 ATTGAA--TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572
||||| || | ||| || | || |||||||||||||| ||||| || || |
Sbjct 216910 -TTGAACTTCTTGGCT---GAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGG 216855
Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCC 18632
|| || || |||| ||| | | || || | | | || | ||| || | ||
Sbjct 216854 CGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCC 216795
Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692
| | | || ||||| || ||||| || || || | |||||||| || | ||||| |
Sbjct 216794 AGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTT 216735
Query 18693 GTTTGTACAT 18702
|| |||||
Sbjct 216734 TCTTATACAT 216725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731843237430400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |