Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3106 102 1e-16 >seq3106 Length=22756556 Score = 102 bits (112), Expect = 1e-16 Identities = 356/550 (65%), Gaps = 13/550 (2%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || || || ||| ||| | || ||||||||| || | ||| || ||| || | Sbjct 217266 CAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGG 217207 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 |||||||| | || | ||| || ||||| || ||||| || ||| || |||||| || Sbjct 217206 CCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAG 217147 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT 18337 || || || ||| || || |||| | | ||| || || || | ||| | Sbjct 217146 ATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCA 217087 Query 18338 ATCCATTTTTGTGCCCATTCTC-CTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 ||||| ||||| || ||| | ||| || || |||| || ||||| Sbjct 217086 ATCCAGCGCAAGGCCCAGTCCGACTTCTTC----ACACAGGGCATGGTCTCGATGGCATT 217031 Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456 || | || ||||| |||||||||| |||||||| ||||| | | | ||||| Sbjct 217030 GAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGACTGTACAT 216971 Query 18457 TTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC-GGGAT 18515 ||||||||| ||| ||||||| || ||||| || | || || | | |||||| | ||| Sbjct 216970 TTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGAT 216911 Query 18516 ATTGAA--TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 ||||| || | ||| || | || |||||||||||||| ||||| || || | Sbjct 216910 -TTGAACTTCTTGGCT---GAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGG 216855 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCC 18632 || || || |||| ||| | | || || | | | || | ||| || | || Sbjct 216854 CGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCC 216795 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 | | | || ||||| || ||||| || || || | |||||||| || | ||||| | Sbjct 216794 AGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTT 216735 Query 18693 GTTTGTACAT 18702 || ||||| Sbjct 216734 TCTTATACAT 216725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731843237430400