Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq3061 96.9 7e-15
seq3082 89.7 1e-12
>seq3061
Length=7642621
Score = 96.9 bits (106), Expect = 7e-15
Identities = 147/205 (72%), Gaps = 7/205 (3%)
Strand=Plus/Minus
Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391
||| | ||| | ||| ||| || || || |||||||| || || | | |||| |||| ||
Sbjct 2174621 ATGAAGAGTGGTCTCCTTTTGA-ATGTTGTAATCAGACAAAGTGCATCCATCTTCCAGTT 2174563
Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451
|||||||||||| | || ||||||||||| || |||||||| ||||| || || |
Sbjct 2174562 ----ACCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTTATCCTGGATCT 2174507
Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511
| |||||||| || || ||||| | ||| | | || || ||||| || || |
Sbjct 2174506 TGGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGTGATGGTCTTTCCTG 2174447
Query 192512 TTAATGTTTTAATAAATATCTGCAT 192536
||| | ||| || || ||||||||
Sbjct 2174446 -TAAGGGTTTTATGAAAATCTGCAT 2174423
>seq3082
Length=10725151
Score = 89.7 bits (98), Expect = 1e-12
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
||||| || ||||| | || | || | ||||| |||||| ||| || || |||||
Sbjct 1251691 CCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAA 1251632
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
| || || |||| |||| || || || |||||||| | ||||| || ||||| ||
Sbjct 1251631 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 1251572
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489
|| ||||||||||| || || || || ||||| || | || | || |||
Sbjct 1251571 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACT 1251512
Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || ||||| || ||||| | ||| || | || ||||||||
Sbjct 1251511 TCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984440342684400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |