Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3061 96.9 7e-15 seq3082 89.7 1e-12 >seq3061 Length=7642621 Score = 96.9 bits (106), Expect = 7e-15 Identities = 147/205 (72%), Gaps = 7/205 (3%) Strand=Plus/Minus Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 ||| | ||| | ||| ||| || || || |||||||| || || | | |||| |||| || Sbjct 2174621 ATGAAGAGTGGTCTCCTTTTGA-ATGTTGTAATCAGACAAAGTGCATCCATCTTCCAGTT 2174563 Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451 |||||||||||| | || ||||||||||| || |||||||| ||||| || || | Sbjct 2174562 ----ACCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTTATCCTGGATCT 2174507 Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 | |||||||| || || ||||| | ||| | | || || ||||| || || | Sbjct 2174506 TGGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGTGATGGTCTTTCCTG 2174447 Query 192512 TTAATGTTTTAATAAATATCTGCAT 192536 ||| | ||| || || |||||||| Sbjct 2174446 -TAAGGGTTTTATGAAAATCTGCAT 2174423 >seq3082 Length=10725151 Score = 89.7 bits (98), Expect = 1e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| || ||||| | || | || | ||||| |||||| ||| || || ||||| Sbjct 1251691 CCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAA 1251632 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| |||| || || || |||||||| | ||||| || ||||| || Sbjct 1251631 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 1251572 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||||||||| || || || || ||||| || | || | || ||| Sbjct 1251571 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACT 1251512 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || ||||| | ||| || | || |||||||| Sbjct 1251511 TCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984440342684400