Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3061 89.7 9e-13 >seq3061 Length=7642621 Score = 89.7 bits (98), Expect = 9e-13 Identities = 143/204 (70%), Gaps = 5/204 (2%) Strand=Plus/Minus Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925 ||| | ||| | ||| || ||| || ||||| || |||| | | | || |||| || Sbjct 2174621 ATGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCATCCATCTTCCAGTT- 2174563 Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 ||||||||| || | || ||||| ||||| || |||||||| ||||| || || || Sbjct 2174562 ---ACCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 2174506 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 |||||||| || ||| ||||| | ||| | | || || ||||| || || | Sbjct 2174505 GGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGTGATGGTCTTTCCTG- 2174447 Query 172046 TAATGTTTTAATGAATATCTGCAT 172069 ||| | ||| ||||| |||||||| Sbjct 2174446 TAAGGGTTTTATGAAAATCTGCAT 2174423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905100428155200