Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3106 95.1 4e-14 seq3036 84.2 6e-11 seq2956 84.2 6e-11 >seq3106 Length=22756556 Score = 95.1 bits (104), Expect = 4e-14 Identities = 220/328 (67%), Gaps = 8/328 (2%) Strand=Plus/Plus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || ||||| || | || | || ||||||||||||||||| ||| | | Sbjct 216686 TTTGTCATCTTCCCTATCGAATACCATGACATTTGGCAGATGTATAAGAAAGCCGAGGCC 216745 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGAC--CCAGCCCACTGGGAAGCCC 133193 | |||||||| || || || ||| | ||||||||| ||| ||||||||||||| Sbjct 216746 TCCTTTTGGACGGCAGAGGAGGTGGATCTTTCCAAAGACATTCAG--CACTGGGAAGCCC 216803 Query 133194 TTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATG 133253 | | || || | | | ||||| || || | || || ||||| || || |||| Sbjct 216804 TGAAGCCCGAGGAGAGATACTTTATATCACACGTTCTGGCTTTCTTTGCCGCCAGCGATG 216863 Query 133254 GTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCC 133313 | || || ||| ||||| | ||||| | |||||||||| | | || || | Sbjct 216864 GCATAGTCAATGAGAATTTGGTGGAGCGGTTCAGCCAAGAAGTTCAAATCACAGAGGCTC 216923 Query 133314 GTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCT--ATCACATATTCTAC 133371 | || || || | ||||| || |||||||| || |||||| | | | ||| | Sbjct 216924 GCTGTTTCTACGGCTTCCAGATCGCCATGGAAAACATTCATTCTGAAATGTACAGTCTCC 216983 Query 133372 TCTAATTGATACTTACATCAAAGATACC 133399 || || |||||||| ||||||||| || Sbjct 216984 TC--ATCGATACTTATATCAAAGATTCC 217009 >seq3036 Length=4543131 Score = 84.2 bits (92), Expect = 6e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 289111 GCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACA 289170 ||||| | ||| ||| ||||||| ||||||| || | || | | || | ||| Sbjct 4304501 GCTCCCACACCCACAAACATTTCATCAAATTCTGATCCAGAAGCATATTAAAAAGGAACA 4304560 Query 289171 TTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCT 289230 | ||||| ||||| || || || || ||||||||||| |||||||| ||||||||| || Sbjct 4304561 TCAGCTTCTCCTGCCACAGCTCTGGCAAGAAGTGTCTTTCCTGTTCCTGGTGGTCCCACT 4304620 Query 289231 AATAGAACTCC 289241 || |||| ||| Sbjct 4304621 AAAAGAATTCC 4304631 >seq2956 Length=1441208 Score = 84.2 bits (92), Expect = 6e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 289111 GCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACA 289170 ||||| | ||| ||| ||||||| ||||||| || | || | | || | ||| Sbjct 1364100 GCTCCCACACCCACAAACATTTCATCAAATTCTGATCCAGAAGCATATTAAAAAGGAACA 1364159 Query 289171 TTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCT 289230 | ||||| ||||| || || || || ||||||||||| |||||||| ||||||||| || Sbjct 1364160 TCAGCTTCTCCTGCCACAGCTCTGGCAAGAAGTGTCTTTCCTGTTCCTGGTGGTCCCACT 1364219 Query 289231 AATAGAACTCC 289241 || |||| ||| Sbjct 1364220 AAAAGAATTCC 1364230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471758311507528