Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq3105 170 2e-36
seq3141 152 6e-31
seq3106 150 2e-30
seq3035 149 8e-30
seq3137 134 2e-25
seq3140 111 2e-18
seq3062 95.1 1e-13
seq3018 89.7 6e-12
>seq3105
Length=21505965
Score = 170 bits (188), Expect = 2e-36
Identities = 159/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 20450443 GCTTGGCCAGCTCCCCGGGCAGCAGCAGCCGCACGGCAGTCTGGATCTCCCGCGACGTGA 20450502
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 20450503 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 20450562
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 20450563 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCCGTGTCGGGGT 20450622
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
||||||||||||||||||||||
Sbjct 20450623 GCACCTGCTTGAGCACCTTGTA 20450644
Score = 170 bits (188), Expect = 2e-36
Identities = 159/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 20495720 GCTTGGCCAGCTCCCCGGGCAGCAGCAGCCGCACGGCAGTCTGGATCTCCCGCGACGTGA 20495661
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 20495660 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 20495601
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 20495600 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 20495541
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
||||||||||||||||||||||
Sbjct 20495540 GCACCTGCTTGAGCACCTTGTA 20495519
Score = 170 bits (188), Expect = 2e-36
Identities = 159/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 20516602 GCTTGGCCAGCTCCCCGGGCAGCAGCAGCCGCACGGCAGTCTGGATCTCCCGCGACGTGA 20516661
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 20516662 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 20516721
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 20516722 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 20516781
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
||||||||||||||||||||||
Sbjct 20516782 GCACCTGCTTGAGCACCTTGTA 20516803
Score = 161 bits (178), Expect = 1e-33
Identities = 157/202 (78%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 20509054 GCTTGGCCAGCTCCCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 20508995
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| |||||||| |||||||||| || |||||| | ||||||| || | |
Sbjct 20508994 TGGTGGATCGCTTGTTGTAGTGCGCCAGGCGTGACGCCTCGCCGGCGATGCGCTCAAAAA 20508935
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 20508934 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 20508875
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
||||||||||||||||||||||
Sbjct 20508874 GCACCTGCTTGAGCACCTTGTA 20508853
Score = 161 bits (178), Expect = 1e-33
Identities = 157/202 (78%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||| |||||||| ||||||||||| |||| ||
Sbjct 20572337 GCTTGGCCAGCTCCCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 20572278
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| | | || || |||| |
Sbjct 20572277 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCAATACGCTCGAAGA 20572218
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| ||||||||| ||||||||
Sbjct 20572217 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 20572158
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
||||||||||||||||||||||
Sbjct 20572157 GCACCTGCTTGAGCACCTTGTA 20572136
Score = 143 bits (158), Expect = 3e-28
Identities = 153/202 (76%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||| || || || ||| | ||| || ||||| ||||||||||| |||| ||
Sbjct 20553706 GCTTGGCTAGCTCTCCTGGCAGCAGCAGTCGGACGGCCGTCTGGATCTCCCGCGACGTGA 20553647
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||| ||||| |||||||||| || |||||| | ||||||| |||| |
Sbjct 20553646 TGGTGGAGCGTTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGTTCGAAGA 20553587
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||| | ||| | |||| ||||||||| |||||| |
Sbjct 20553586 TGTCGTTGACGAAAGAGTTCATAATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGAT 20553527
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
||||||||||||||||||||||
Sbjct 20553526 GCACCTGCTTGAGCACCTTGTA 20553505
Score = 140 bits (154), Expect = 4e-27
Identities = 152/202 (75%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||| | ||| || ||||||||||| |||| ||
Sbjct 20382250 GCTTGGCCAGCTCCCCGGGCAGCAACAGCCTCACAGCAGTCTGGATCTCCCGCGACGTGA 20382309
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 20382310 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGATGCCTCGCCTGCGATGCGCTCGAAGA 20382369
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| || ||||| ||| ||||
Sbjct 20382370 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAAATGCCTGTGTCTGGGT 20382429
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
||||||| ||||||||||||||
Sbjct 20382430 GCACCTGTTTGAGCACCTTGTA 20382451
Score = 91.5 bits (100), Expect = 2e-12
Identities = 148/209 (71%), Gaps = 8/209 (4%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||| ||||| || ||||||||||| || || ||
Sbjct 19952424 GCTTGGCCAGCTCCCCGGGCAGCAGCAGCCGCACAGCCGTCTGGATCTCCCG--TGATGA 19952367
Query 1254403 TCGTGTTG--CGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGC--GGTCG 1254458
|||| |||||||| |||| ||||| || |||||| |||| | | ||
Sbjct 19952366 AATGGTTGAACGCTTGTTGTAGTGTGCCAGGCGTGATGCCTCGCA--CGATACCCGTTCA 19952309
Query 1254459 ATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCG 1254518
| ||||| |||||| || |||| || ||| | ||| |||||||||| |||
Sbjct 19952308 AATATGTCAGAGACAAAGGAATTCAAGATGCTCATAGCCTTTGAGGAGATGCCCGTGTCT 19952249
Query 1254519 GGGTGCACCTGCTTGAGCACCTTGTAGAT 1254547
|| || |||||||| ||||||||||||||
Sbjct 19952248 GGATGAACCTGCTTTAGCACCTTGTAGAT 19952220
>seq3141
Length=78381119
Score = 152 bits (168), Expect = 6e-31
Identities = 155/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| ||||| ||| | |||||||||||| |||||||||||||| | ||
Sbjct 10969094 GCTTGGCCAGCTCGCCCGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCGCGGGACGTGA 10969153
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||| ||||| || |||||| ||||||| |||| |
Sbjct 10969154 TGGTCGAGCGCTTGTTGTAGTGTGCCAGGCGCGACGCCTCGCCAGCGATGCGCTCGAAGA 10969213
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| |||||||| ||||||||
Sbjct 10969214 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGT 10969273
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 10969274 GCACCTGCTTCAGCACCTTGTA 10969295
Score = 149 bits (164), Expect = 8e-30
Identities = 154/202 (76%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| ||||| ||| | |||||||||||| |||||||||||||| | ||
Sbjct 10937234 GCTTGGCCAGCTCGCCCGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCGCGGGACGTGA 10937175
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||| ||||| || |||||| ||||||| |||| |
Sbjct 10937174 TGGTCGAGCGCTTGTTGTAGTGTGCCAGGCGAGACGCCTCGCCAGCGATGCGCTCGAAGA 10937115
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||| ||||| || |||||| ||| ||| | |||| ||||||||| ||||||||
Sbjct 10937114 TGTCATTGACGAAGGAGTTCGTGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 10937055
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 10937054 GCACCTGCTTCAGCACCTTGTA 10937033
Score = 149 bits (164), Expect = 8e-30
Identities = 154/202 (76%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| ||||| ||| | |||||||||||| |||||||||||||| | ||
Sbjct 10948483 GCTTGGCCAGCTCGCCCGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCGCGGGACGTGA 10948542
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||| ||||| || |||||| ||||||| |||| |
Sbjct 10948543 TGGTCGAGCGCTTGTTGTAGTGTGCCAGGCGAGACGCCTCGCCAGCGATGCGCTCGAAGA 10948602
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||| ||||| || |||||| ||| ||| | |||| ||||||||| ||||||||
Sbjct 10948603 TGTCATTGACGAAGGAGTTCGTGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 10948662
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 10948663 GCACCTGCTTCAGCACCTTGTA 10948684
Score = 140 bits (154), Expect = 4e-27
Identities = 152/202 (75%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| ||||| ||| | |||||||||||| ||||||||||| || | ||
Sbjct 10917460 GCTTGGCCAGCTCGCCTGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCACGGGACGTGA 10917519
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||| ||||| || |||||| ||||||| |||| |
Sbjct 10917520 TGGTTGAGCGCTTGTTGTAGTGTGCCAGGCGCGACGCCTCGCCAGCGATGCGCTCGAAGA 10917579
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| |||||||| ||| ||||
Sbjct 10917580 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGT 10917639
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
| |||||||| |||||||||||
Sbjct 10917640 GGACCTGCTTCAGCACCTTGTA 10917661
>seq3106
Length=22756556
Score = 150 bits (166), Expect = 2e-30
Identities = 220/311 (71%), Gaps = 0/311 (0%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|| || ||||| || |||||||||||||||||||| || | |||||| | |||
Sbjct 216966 GAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGA 216907
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || | ||||||| | ||| ||||| || ||||| ||||||||||| ||
Sbjct 216906 ACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAAG 216847
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812
|||||||| ||||| ||||||| | ||| ||| | || | |||||||
Sbjct 216846 AAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCCAGTGCTGA 216787
Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872
|||| | || ||||||||||| || ||||| | ||||||||||| || || |||
Sbjct 216786 ATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATAC 216727
Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGC 869932
|||| ||| | | ||||| ||||||||||| ||||||||| |||||| || | |
Sbjct 216726 ATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAAGCGCCGGGGGTTCTCTCTC 216667
Query 869933 AACAGGGGTTC 869943
| ||| |||||
Sbjct 216666 AGCAGTGGTTC 216656
Score = 96.9 bits (106), Expect = 4e-14
Identities = 182/264 (69%), Gaps = 14/264 (5%)
Strand=Plus/Minus
Query 869192 CTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAG 869251
||||| | ||| ||| ||||| ||||||||||||||| || || ||||| ||||| |||
Sbjct 217233 CTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAG 217174
Query 869252 ATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCG 869310
|| | |||| ||| || || ||||||||||| || ||||| |||||| | | | ||
Sbjct 217173 ATCGACGCA-AAAGAACCAGAAAAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCG 217115
Query 869311 CTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTT 869367
|| || | || | |||| |||| ||||| || |||||||| | |
Sbjct 217114 TTCCCCATAAGT------GGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAGTCCGAC-- 217063
Query 869368 TTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTC 869427
||| |||| | |||| || |||||||| |||||| ||| |||| | ||
Sbjct 217062 -TTCTTCACACAGGGCATGGTCTCGATGGCATTGAAGAGGAACTCCCTTTCTCTGGAATC 217004
Query 869428 CTTGACATAGGTGTCGATCAGGAG 869451
|||| ||| || ||||| |||||
Sbjct 217003 TTTGATATAAGTATCGATGAGGAG 216980
>seq3035
Length=4563218
Score = 149 bits (164), Expect = 8e-30
Identities = 154/202 (76%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||| |||||||| ||||||||||| || | ||
Sbjct 1658310 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGGATCTCCCGAGACGTGA 1658369
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 1658370 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGAAGCCTCGCCCGCGATGCGCTCGAAGA 1658429
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||| |||||||||||||||| ||| | |||| ||||||||| ||| ||||
Sbjct 1658430 TGTCGTTCACAAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 1658489
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||| ||||| |||||||||||
Sbjct 1658490 GCACTTGCTTCAGCACCTTGTA 1658511
Score = 143 bits (158), Expect = 3e-28
Identities = 153/202 (76%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||| |||||||| ||||||||||| || | ||
Sbjct 1623916 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGGATCTCCCGAGACGTGA 1623975
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 1623976 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGAAGCCTCGCCCGCGATGCGCTCGAAGA 1624035
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||| || ||||||||||||| ||| | |||| ||||||||| ||| ||||
Sbjct 1624036 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 1624095
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||| ||||| |||||||||||
Sbjct 1624096 GCACTTGCTTCAGCACCTTGTA 1624117
Score = 143 bits (158), Expect = 3e-28
Identities = 153/202 (76%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||| |||||||| ||||||||||| || | ||
Sbjct 1645402 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGGATCTCCCGAGACGTGA 1645343
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 1645342 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGAAGCCTCGCCCGCGATGCGCTCGAAGA 1645283
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||| || ||||||||||||| ||| | |||| ||||||||| ||| ||||
Sbjct 1645282 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 1645223
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||| ||||| |||||||||||
Sbjct 1645222 GCACTTGCTTCAGCACCTTGTA 1645201
Score = 140 bits (154), Expect = 4e-27
Identities = 161/217 (74%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | ||| |||||||| ||||||||||| || | ||
Sbjct 1915094 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGGATCTCCCGAGATGTGA 1915035
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || |||||||| |||||||||| || ||||| ||||||| |||| |
Sbjct 1915034 TGGTCGAACGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCACCCGCGATGCGCTCGAAAA 1914975
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||| || ||||||||||||| ||| | |||| ||||||||| ||| ||||
Sbjct 1914974 TGTCGTTCACGAACGAGTTCATGATACCCATAGCCTTGGACGAGATGCCCGTGTCCGGGT 1914915
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
|||| ||||| ||||||||||| | | || ||||||
Sbjct 1914914 GCACTTGCTTCAGCACCTTGTACACGTACACCGAGTA 1914878
Score = 134 bits (148), Expect = 2e-25
Identities = 151/202 (75%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| | | | ||| |||||||| ||||||||||| || | ||
Sbjct 1665757 GCTTGGCCAGCTCCCCGGGGAGCAGCAGACGCACGGCCGTCTGGATCTCCCGAGACGTGA 1665698
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| |||||||||| || |||||| ||||||| |||| |
Sbjct 1665697 TGGTCGAGCGCTTGTTGTAGTGCGCCAGGCGCGAAGCCTCGCCCGCGATGCGCTCGAAGA 1665638
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||| || ||||||||||||| ||| | |||| ||||||||| ||| ||||
Sbjct 1665637 TGTCGTTCACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 1665578
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||| || || |||||||||||
Sbjct 1665577 GCACTTGTTTCAGCACCTTGTA 1665556
>seq3137
Length=61187194
Score = 134 bits (148), Expect = 2e-25
Identities = 151/202 (75%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | |||||||||||| ||| | | ||| | || |||
Sbjct 599437 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCGGCACCTCTCCCGACACGA 599496
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||| | |||||||||| || |||||| || ||||| | |||| |
Sbjct 599497 TGGTCAAGCGCTTGCTGTAGTGCGCCAGGCGCGACGCCTCGATGGCGATGTGCTCGAAGA 599556
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| | |||||||||| ||| | |||| || ||||| ||||||||
Sbjct 599557 TGTCGTTGACGATGGAGTTCATGATGCCCATGGCCTTGGAAGACATGCCTGTGTCGGGGT 599616
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| |||||||||||
Sbjct 599617 GCACCTGCTTCAGCACCTTGTA 599638
Score = 120 bits (132), Expect = 4e-21
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427
|||||||||||| || | | ||| | || ||| || ||||||| | |||||||
Sbjct 587531 CAGGCGCACGGCCGTGGGCACCTCTCCCGACAGGATGGTCAAGCGCTTGCTGTAGTGCGC 587472
Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487
||| || |||||| || ||||||| |||| ||||| ||||| || ||||||||||
Sbjct 587471 CAGGCGCGAAGCCTCGATGGCGATGCGCTCGAAGATGTCATTGACGAAGGAGTTCATGAT 587412
Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGA 1254546
||| | |||| || ||||| |||||||||||||||||| |||||||||||||
Sbjct 587411 GCCCATGGCCTTGGAAGACATGCCTGTGTCGGGGTGCACCTGCTTCAGCACCTTGTAGA 587353
>seq3140
Length=75551126
Score = 111 bits (122), Expect = 2e-18
Identities = 103/131 (79%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224
||||| ||||| | || || || || |||||||| |||||||| | |||| ||| ||
Sbjct 46046861 ACCCTTTTTGAACTTATTCTGGCAGCAAACTACCTAGACATCAAAGGTTTGCTTGATGTT 46046920
Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284
|||||| |||| ||||| ||||||||||| || | || |||||||| |||||||||
Sbjct 46046921 ACATGCAAGACTGTTGCCAATATGATCAAGGGGAAAACTCCTGAGGAGATTCGCAAGACC 46046980
Query 1592285 TTTAACATCAA 1592295
||||| |||||
Sbjct 46046981 TTTAATATCAA 46046991
>seq3062
Length=7649460
Score = 95.1 bits (104), Expect = 1e-13
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| || |||||||| |||||||| | |||| ||| || |||||| |||| |||||
Sbjct 3152431 GCAGCAAACTACCTAGACATCAAAGGTTTGCTTGATGTTACATGCAAGACTGTTGCCAAT 3152372
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295
||||||||||| || | || |||||||| |||||||| ||||| |||||
Sbjct 3152371 ATGATCAAGGGGAAAACTCCTGAGGAGATTCGCAAGACTTTTAATATCAA 3152322
>seq3018
Length=3443724
Score = 89.7 bits (98), Expect = 6e-12
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889
||||||||| || ||||| | ||||||||||| || || ||||||| ||| | | ||
Sbjct 3379085 CACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATACATCTGCCAAATGTCATG 3379144
Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943
||| ||||||||||| ||||||||| |||||| || | || ||| |||||
Sbjct 3379145 GTATTCGATAGGGAAGATGACAAAGCGCCGGGGGTTCTCTCTCAGCAGTGGTTC 3379198
Score = 86.0 bits (94), Expect = 8e-11
Identities = 86/109 (79%), Gaps = 2/109 (2%)
Strand=Plus/Plus
Query 869192 CTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAG 869251
||||| | ||| ||| ||||| ||||||||||||||| || || ||||| ||||| |||
Sbjct 3376791 CTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAG 3376850
Query 869252 AT-GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299
|| | |||| ||| || || ||||||||||| || || || ||||||
Sbjct 3376851 ATCGACGCA-AAAGAACCAGAAAAAAAGATGCCTTCCACAGCAGCAAAG 3376898
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106881188636648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |