Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2997 120 3e-22 seq3063 118 1e-21 seq3061 116 3e-21 seq3105 104 2e-17 seq2965 98.7 9e-16 seq3082 93.3 4e-14 seq3135 86.0 6e-12 seq3126 84.2 2e-11 >seq2997 Length=2481227 Score = 120 bits (132), Expect = 3e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||| ||||| || || ||||| | | || || || | || ||||| || ||| || | Sbjct 411485 GATACAGATTTTCATAAAAACCGTTATGGGGAAGACCACCAC-CTCGAGGTTGAACCCTC 411543 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| ||||||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 411544 GGACACTGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 411603 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATA 24881 ||| | |||||||||| || || || ||||| |||| || || | ||| | ||| | Sbjct 411604 GCAAGGGCTGATCTTTGCTGGTAAGCAACTGGAAGATTGGATGTACTTTGTCTGGTTACA 411663 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||||||||||||| | || || || | |||||| || Sbjct 411664 ACATTCAAAAGGAGTTCACTCTTCATCTTGTGTTGAGA 411701 >seq3063 Length=7952490 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || | || || || ||| | || || || | Sbjct 5877502 GATGCAGATTTTCGTAAAAACCCTTACGGGGAGGACCATCACCCTCCAGGTTGAGCCCTC 5877561 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 | |||| |||||| ||||| ||||||||||| || |||||||| ||||| ||||| Sbjct 5877562 CAACACTATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGATCA 5877621 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||||||| || || || ||||| ||| | | |||| ||||| || Sbjct 5877622 GCAAAGGCTGATCTTTGTTGGTAAGCAACTGGAAGATGGATGCACTTTGTCTGATTACAA 5877681 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| ||| || || || || | |||||| || | || || || Sbjct 5877682 CATTCAAAGGGAGTCCACTCTCCATCTTGTGTTGAGACTCCGTGGTGG 5877729 >seq3061 Length=7642621 Score = 116 bits (128), Expect = 3e-21 Identities = 158/219 (72%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || ||||| || || || || || || || ||| | | ||| | | Sbjct 2174422 GATGCAGATTTTCAT-AAAACCCTTACAGGAAAGACCATCACCCTCAAGGCTGAACCTTC 2174480 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| ||||||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 2174481 AGACACTGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 2174540 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||| | |||||||||| || || ||||| ||| | | |||| ||||| || Sbjct 2174541 ACAAAGGCTGATCTTTGCTGGTAA----CTGGAAGATGGATGCACTTTGTCTGATTACAA 2174596 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 |||||||||||| | || || || | ||| || |||| Sbjct 2174597 CATTCAAAAGGAGACCACTCTTCATCTTGTGCTGAGATT 2174635 >seq3105 Length=21505965 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||| ||| ||| | ||||| | || || || || || | | ||| ||| || Sbjct 7417563 GATGCCGATTTTTGTAAAAACCTTTACAGGGAAGACCATCATCCACGAGACTGAACCCCT 7417504 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 7417503 GGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 7417444 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||| | | ||| ||||| ||| | | |||| ||||| || Sbjct 7417443 GCAAAGGCTGATCTTTGCTGCTACACAACTGGAAGATGGACGTACTTTGTCTGATTACAA 7417384 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGG 24927 |||||||||||| || || || || | |||||| || | || || Sbjct 7417383 CATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTCCGTGG 7417339 >seq2965 Length=1497097 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || ||||| ||||| ||| Sbjct 1203886 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCCAGT 1203945 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 1203946 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 1204005 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || || |||||||| || | | | | | || || || ||| Sbjct 1204006 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 1204065 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| |||| |||| || | ||||| Sbjct 1204066 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGGGGAGG 1204112 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || || || || || || || ||||| ||||| || Sbjct 1203655 ACAATGCAGATCTTCGTAAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCC 1203714 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || |||||||||||||| || || || || || || Sbjct 1203715 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGAC 1203774 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | ||||||| || || || |||||||| || | | | | | || || || Sbjct 1203775 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTAC 1203834 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || || ||| |||| |||| || | || ||| Sbjct 1203835 AACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1203885 >seq3082 Length=10725151 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 1251236 GATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAG 1251295 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| || |||||||| || ||||| || || Sbjct 1251296 CGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCA 1251355 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | |||||||| || || |||||||| ||| | | | || || || || Sbjct 1251356 GCAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAA 1251415 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || || || || || || ||| ||||| |||| Sbjct 1251416 CATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCG 1251451 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || || ||||| || ||| Sbjct 1251464 GATGCAGATCTTCGTGAAGACACTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAG 1251523 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| || |||||||| || ||||| || || Sbjct 1251524 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCA 1251583 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | |||||||| || || |||||||| ||| | | | || || || || Sbjct 1251584 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAA 1251643 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || || || || || ||| |||| Sbjct 1251644 CATCCAGAAAGAGTCTACTCTGCACCTGGT 1251673 >seq3135 Length=60673567 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/209 (71%), Gaps = 7/209 (3%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || |||| || || || || || || || || || ||| Sbjct 60530222 GATGCAGATATTCGTGAAGACCCTAAGGGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 60530281 Query 24763 CGACAC-AGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 |||||| ||| || | ||| | ||| ||||||||||| ||||| || || ||||| | Sbjct 60530282 CGACACCAGTGAGAATGTCAAAGCCAAA-ATCCAAGACAAGGAAGGCATCCCACCCGACC 60530340 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATTA 24879 | | | || | |||||||| |||||||||||||| ||| || | | || || || Sbjct 60530341 AGCGGCTCCTGGTATTTGCCGGCAAACAGCTGGAGGACGGTCG-GACTC-TCTCGGACTA 60530398 Query 24880 TAACATTCAAAAGGAATCGACACTACACT 24908 |||||||| || || || |||||| || Sbjct 60530399 CAACATTCAGAAAGAGTC-CCACTACCCT 60530426 >seq3126 Length=40167016 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || ||||| || | | ||||| || || ||| Sbjct 36688980 GATGCAGATCTTCGTGAAGACCCTGACGGGTAAGACCACCATCCTCGAGGTCGAGCCCAG 36688921 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | | ||||| ||| ||||||||||| || | || || || || || Sbjct 36688920 TGACACC------AAGTCAAAACCAAA-ATCCAAGACAAGGAGAGCATCCCACCTGAACA 36688868 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||| || ||| | ||||||||||||||| | | | ||||| || || Sbjct 36688867 GCAGTGCCTGATATTCGCCAGCAAACAGCTGGAGGATGGTTGGACTCTCTCAGACTACAA 36688808 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| ||||| || || || |||||| |||| || | |||| || || Sbjct 36688807 CATCCAAAAAGAGTCCACCCTACACCTGGTACTGTGCCTGCGAGGTGG 36688760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449879919024320