Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq2997 120 3e-22
seq3063 118 1e-21
seq3061 116 3e-21
seq3105 104 2e-17
seq2965 98.7 9e-16
seq3082 93.3 4e-14
seq3135 86.0 6e-12
seq3126 84.2 2e-11
>seq2997
Length=2481227
Score = 120 bits (132), Expect = 3e-22
Identities = 159/218 (73%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||| ||||| || || ||||| | | || || || | || ||||| || ||| || |
Sbjct 411485 GATACAGATTTTCATAAAAACCGTTATGGGGAAGACCACCAC-CTCGAGGTTGAACCCTC 411543
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| ||||||| ||||| |||||||| || || |||||||| ||||| |||||
Sbjct 411544 GGACACTGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 411603
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATA 24881
||| | |||||||||| || || || ||||| |||| || || | ||| | ||| |
Sbjct 411604 GCAAGGGCTGATCTTTGCTGGTAAGCAACTGGAAGATTGGATGTACTTTGTCTGGTTACA 411663
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919
||||||||||||| | || || || | |||||| ||
Sbjct 411664 ACATTCAAAAGGAGTTCACTCTTCATCTTGTGTTGAGA 411701
>seq3063
Length=7952490
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || | ||||| || || || | || || || ||| | || || || |
Sbjct 5877502 GATGCAGATTTTCGTAAAAACCCTTACGGGGAGGACCATCACCCTCCAGGTTGAGCCCTC 5877561
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
| |||| |||||| ||||| ||||||||||| || |||||||| ||||| |||||
Sbjct 5877562 CAACACTATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGATCA 5877621
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | ||||||||| || || || ||||| ||| | | |||| ||||| ||
Sbjct 5877622 GCAAAGGCTGATCTTTGTTGGTAAGCAACTGGAAGATGGATGCACTTTGTCTGATTACAA 5877681
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|||||||| ||| || || || || | |||||| || | || || ||
Sbjct 5877682 CATTCAAAGGGAGTCCACTCTCCATCTTGTGTTGAGACTCCGTGGTGG 5877729
>seq3061
Length=7642621
Score = 116 bits (128), Expect = 3e-21
Identities = 158/219 (72%), Gaps = 5/219 (2%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || || ||||| || || || || || || || ||| | | ||| | |
Sbjct 2174422 GATGCAGATTTTCAT-AAAACCCTTACAGGAAAGACCATCACCCTCAAGGCTGAACCTTC 2174480
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| ||||||| ||||| |||||||| || || |||||||| ||||| |||||
Sbjct 2174481 AGACACTGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 2174540
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|||| | |||||||||| || || ||||| ||| | | |||| ||||| ||
Sbjct 2174541 ACAAAGGCTGATCTTTGCTGGTAA----CTGGAAGATGGATGCACTTTGTCTGATTACAA 2174596
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921
|||||||||||| | || || || | ||| || ||||
Sbjct 2174597 CATTCAAAAGGAGACCACTCTTCATCTTGTGCTGAGATT 2174635
>seq3105
Length=21505965
Score = 104 bits (114), Expect = 2e-17
Identities = 158/225 (70%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||| ||| ||| | ||||| | || || || || || | | ||| ||| ||
Sbjct 7417563 GATGCCGATTTTTGTAAAAACCTTTACAGGGAAGACCATCATCCACGAGACTGAACCCCT 7417504
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| |||||| ||||| |||||||| || || |||||||| ||||| |||||
Sbjct 7417503 GGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 7417444
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| | |||||||||| | | ||| ||||| ||| | | |||| ||||| ||
Sbjct 7417443 GCAAAGGCTGATCTTTGCTGCTACACAACTGGAAGATGGACGTACTTTGTCTGATTACAA 7417384
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGG 24927
|||||||||||| || || || || | |||||| || | || ||
Sbjct 7417383 CATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTCCGTGG 7417339
>seq2965
Length=1497097
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||||||||| | || || || || || || || || || ||||| ||||| |||
Sbjct 1203886 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCCAGT 1203945
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||||||||| || || || || || || ||
Sbjct 1203946 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 1204005
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||||| || || || |||||||| || | | | | | || || || |||
Sbjct 1204006 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 1204065
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| || || || ||| |||| |||| || | |||||
Sbjct 1204066 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGGGGAGG 1204112
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||||||||| | || || || || || || || || || ||||| ||||| ||
Sbjct 1203655 ACAATGCAGATCTTCGTAAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCC 1203714
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| ||||| | || | || || |||||||||||||| || || || || || ||
Sbjct 1203715 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGAC 1203774
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|| || | ||||||| || || || |||||||| || | | | | | || || ||
Sbjct 1203775 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTAC 1203834
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931
||||| || ||||| || || || ||| |||| |||| || | || |||
Sbjct 1203835 AACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1203885
>seq3082
Length=10725151
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||||||| | || || || || || || || || || || || || || |||
Sbjct 1251236 GATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAG 1251295
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|||||| | || | || || |||||||| || |||||||| || ||||| || ||
Sbjct 1251296 CGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCA 1251355
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | | |||||||| || || |||||||| ||| | | | || || || ||
Sbjct 1251356 GCAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAA 1251415
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
||| || || || || || || ||| ||||| ||||
Sbjct 1251416 CATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCG 1251451
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||||||| | || || || || || || || || || || ||||| || |||
Sbjct 1251464 GATGCAGATCTTCGTGAAGACACTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAG 1251523
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || | || || |||||||| || |||||||| || ||||| || ||
Sbjct 1251524 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCA 1251583
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | | |||||||| || || |||||||| ||| | | | || || || ||
Sbjct 1251584 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAA 1251643
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912
||| || || || || || || ||| ||||
Sbjct 1251644 CATCCAGAAAGAGTCTACTCTGCACCTGGT 1251673
>seq3135
Length=60673567
Score = 86.0 bits (94), Expect = 6e-12
Identities = 149/209 (71%), Gaps = 7/209 (3%)
Strand=Plus/Plus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || | || || |||| || || || || || || || || || |||
Sbjct 60530222 GATGCAGATATTCGTGAAGACCCTAAGGGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 60530281
Query 24763 CGACAC-AGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821
|||||| ||| || | ||| | ||| ||||||||||| ||||| || || ||||| |
Sbjct 60530282 CGACACCAGTGAGAATGTCAAAGCCAAA-ATCCAAGACAAGGAAGGCATCCCACCCGACC 60530340
Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATTA 24879
| | | || | |||||||| |||||||||||||| ||| || | | || || ||
Sbjct 60530341 AGCGGCTCCTGGTATTTGCCGGCAAACAGCTGGAGGACGGTCG-GACTC-TCTCGGACTA 60530398
Query 24880 TAACATTCAAAAGGAATCGACACTACACT 24908
|||||||| || || || |||||| ||
Sbjct 60530399 CAACATTCAGAAAGAGTC-CCACTACCCT 60530426
>seq3126
Length=40167016
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/228 (68%), Gaps = 7/228 (3%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
|||||||||||| | || || || || ||||| || | | ||||| || || |||
Sbjct 36688980 GATGCAGATCTTCGTGAAGACCCTGACGGGTAAGACCACCATCCTCGAGGTCGAGCCCAG 36688921
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | | ||||| ||| ||||||||||| || | || || || || ||
Sbjct 36688920 TGACACC------AAGTCAAAACCAAA-ATCCAAGACAAGGAGAGCATCCCACCTGAACA 36688868
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
|| | |||| || ||| | ||||||||||||||| | | | ||||| || ||
Sbjct 36688867 GCAGTGCCTGATATTCGCCAGCAAACAGCTGGAGGATGGTTGGACTCTCTCAGACTACAA 36688808
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| ||||| || || || |||||| |||| || | |||| || ||
Sbjct 36688807 CATCCAAAAAGAGTCCACCCTACACCTGGTACTGTGCCTGCGAGGTGG 36688760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449879919024320
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