Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_022563.1 Length=148803 Score E Sequences producing significant alignments: (Bits) Value seq2829 96.9 3e-15 >seq2829 Length=423351 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 6409 TGATTGTAATAGCGGCTCATGGTGCGCATGTTCAGGCGGAAGATCTTCTGCGTCTCCCGC 6468 || ||||| |||| | || |||||||| ||||| ||||| |||| | | | | Sbjct 232247 TGGTTGTAGTAGCCTCGCAGGGTGCGCAGGTTCACTCGGAAAATCTCAGCCATGTTCGTG 232306 Query 6469 GCGTTCTTGTTCTGATCGGTCCAGTACTTCGTCTCGTTGGTCACGTTCCACGGCACGCTG 6528 || |||| |||| ||| ||| |||| | || | | | ||||| |||||| Sbjct 232307 GCTCTCTTTGTCTGTTCGTCCCAATACTCCTGATCCTCCCGCTCTATCCACCGCACGCGC 232366 Query 6529 GCGACCACCCGCGGGTCGGTGGAGTTGCTGTCGAAGCGGACGATCTCCGTGTCGTCCACG 6588 | |||| | |||||| | || || |||||||||||| |||| |||||||||||||||| Sbjct 232367 GGCTCCACGCTCGGGTCCGCGGCGTCGCTGTCGAAGCGCACGAACTCCGTGTCGTCCACG 232426 Query 6589 TAGCCCAC 6596 |||||||| Sbjct 232427 TAGCCCAC 232434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476022891565120