Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq2965 167 2e-36
seq3126 102 5e-17
seq3082 102 5e-17
seq3135 96.9 2e-15
>seq2965
Length=1497097
Score = 167 bits (184), Expect = 2e-36
Identities = 176/230 (77%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|||||||||| | |||||||||||| | |||| ||||||||| ||||| ||||| ||
Sbjct 1204112 CCTCCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1204053
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| ||||| | || ||||| ||||| || ||||||||||| | |||||||| | ||
Sbjct 1204052 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGG 1203993
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| ||||||||||| | || || ||||| || || || | ||| ||| ||| |
Sbjct 1203992 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTA 1203935
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| || | ||| |||||||| || ||||||||||| || ||||||||||||
Sbjct 1203934 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 1203885
Score = 159 bits (176), Expect = 2e-34
Identities = 174/229 (76%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || |||| | |||||||||||| | |||| ||||||||| ||||| ||||| ||
Sbjct 1203884 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1203825
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| ||||| | || ||||| ||||| || ||||||||||| | |||||||| | ||
Sbjct 1203824 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGG 1203765
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| ||||||||||| | || || ||||| || || || | ||| ||| ||| |
Sbjct 1203764 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCTA 1203707
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || | ||| |||||||| || |||||||||||||| |||||||||||
Sbjct 1203706 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCAT 1203658
>seq3126
Length=40167016
Score = 102 bits (112), Expect = 5e-17
Identities = 150/213 (70%), Gaps = 7/213 (3%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||||||| | |||| ||| || || ||||| ||||| || || | | ||||
Sbjct 36688774 CAGTACCAGGTGTAGGGTGGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTCCAACCATC 36688833
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| || || | |||||| ||||| | ||||| || | || | | |||||||||
Sbjct 36688834 CTCCAGCTGTTTGCTGGCGAATATCAGGCACTGCTGTTCAGGTGGGATGCTCTCCTTGTC 36688893
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| ||||| |||||| | | ||| ||| |||||| || | | | ||||
Sbjct 36688894 TTGGATTTTGGTTTTGACT-------TGGTGTCACTGGGCTCGACCTCGAGGATGGTGGT 36688946
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| ||||| |||||||| || |||||||||||
Sbjct 36688947 CTTACCCGTCAGGGTCTTCACGAAGATCTGCAT 36688979
>seq3082
Length=10725151
Score = 102 bits (112), Expect = 5e-17
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||||| | ||||||||||| | || ||| ||||| ||||| ||||| ||
Sbjct 1251691 CCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAA 1251632
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| || || ||||| || | |||||||| | ||
Sbjct 1251631 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 1251572
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| || || || || | || || || || || || || | ||| ||| ||| |
Sbjct 1251571 ATGCCTTCTTTATCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCCA 1251514
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || | ||| |||||||| || || || ||||| || |||||||||||
Sbjct 1251513 CTTCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || |||| | ||| |||||||| | ||| ||| ||||| ||||| ||||| ||
Sbjct 1251463 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1251404
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| |||| |||| ||||| ||||| || || ||||| || | |||||||| | ||
Sbjct 1251403 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGA 1251344
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| || || || || | || || || || || || || | || ||| ||| |
Sbjct 1251343 ATGCCTTCTTTATCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCCA 1251286
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || | || |||||||| || || || ||||| || |||||||||||
Sbjct 1251285 CCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1251237
>seq3135
Length=60673567
Score = 96.9 bits (106), Expect = 2e-15
Identities = 139/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||| ||||||||||| |||||||| || | || | || ||||| || || ||||| ||
Sbjct 60530414 CTCTTTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCCGGCAAA 60530355
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
| ||| | ||||||| | || | || |||||||| | ||||| |||||| |
Sbjct 60530354 TACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTGAC--A 60530297
Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| || | | || ||| ||| || |||| ||| |||||||| ||| | ||||||||
Sbjct 60530296 TTCTCACTGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCCTTAGGGTCTTC 60530237
Query 34964 ACAAAGATCTGCAT 34977
|| || ||||||||
Sbjct 60530236 ACGAATATCTGCAT 60530223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325680320266136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |