Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq3082 82.4 6e-11
>seq3082
Length=10725151
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612
||||||||||| || || ||||| | || ||||| ||||| ||| | || |||| |
Sbjct 1251006 AAAATGCAAATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCC 1251065
Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672
|||| || | | | || || ||||| ||||| |||||| | || ||
Sbjct 1251066 AGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCACCTGAC 1251125
Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732
|||||||| || || | ||| || || |||||||| || | || | | ||||||
Sbjct 1251126 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTAC 1251185
Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
||||| || || ||||| || ||||| ||||| || | || |||| ||
Sbjct 1251186 AACATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1251235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398861516038216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |