Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3061 100 2e-16 seq3105 96.9 3e-15 seq3063 96.9 3e-15 seq2997 87.8 1e-12 seq3135 82.4 6e-11 >seq3061 Length=7642621 Score = 100 bits (110), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 |||||| | |||||| |||| || ||||||||||| ||||| | | |||| ||| Sbjct 2174630 CAGCACAAGATGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCATCCATC 2174571 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || |||| |||||| | |||| ||||| ||||| || ||||| || || || || Sbjct 2174570 TTCCAGTTA----CCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTTATC 2174515 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| ||||||||||||| ||| |||| | | || || || || Sbjct 2174514 CTGGATCTTGGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGTGATGGT 2174455 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | ||||||| ||| |||||||| Sbjct 2174454 CTTTCCTGTAAGGGTTTTATGAAA-ATCTGCAT 2174423 >seq3105 Length=21505965 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| ||||| | | || || ||| Sbjct 7417350 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGTCCATC 7417409 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || |||||| | ||||| | |||| ||||||||||| || ||||| || || || || Sbjct 7417410 TTCCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 7417469 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| |||||| |||| || | | || || Sbjct 7417470 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTCGTGGATGATGGT 7417529 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || |||||||| ||||| ||| |||| || Sbjct 7417530 CTTCCCTGTAAAGGTTTTTACAAAAATCGGCATCTT 7417565 >seq3063 Length=7952490 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | ||| || ||||| || |||||||||| ||||| | | |||| ||| Sbjct 5877715 CAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCATCCATC 5877656 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| || ||| || | |||| ||||||||||| || ||||| || || || || Sbjct 5877655 TTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 5877596 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 ||| | || || ||| |||||| ||||| || | || || | || || || || Sbjct 5877595 TTGGATCTTGGCCTTTACATTTTCTATAGTGTTGGAGGGCTCAACCTGGAGGGTGATGGT 5877536 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || || | |||||| || || |||||||| || Sbjct 5877535 CCTCCCCGTAAGGGTTTTTACGAAAATCTGCATCTT 5877500 >seq2997 Length=2481227 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAG-AAT 29632 || ||| | |||||| ||| | || ||||||||||| ||| | | | || | ||| Sbjct 411698 CAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGACAAAGTACATCCAAT 411639 Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692 | || ||||| || |||||| | |||| | ||||||||| || ||||| || || || | Sbjct 411638 CTTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTAT 411579 Query 29693 CTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 | || | || || ||| ||||||||||||| || |||| || || || || | | Sbjct 411578 CCTGGATCTTGGCCTTTACATTTTCTACAGTGTCCGAGGGTTCAACCTCGAG-GTGGTGG 411520 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || || | | |||||| | || ||||| || || Sbjct 411519 TCTTCCCCATAACGGTTTTTATGAAAATCTGTATCTT 411483 >seq3135 Length=60673567 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 29592 GGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGC 29651 ||| ||||| |||||||| || |||| | || ||| || || || |||||||| || Sbjct 60530417 GGACTCTTTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCCGGC 60530358 Query 29652 ATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGAC 29711 | ||| || |||| || || || || || || |||||||| | ||| |||||| Sbjct 60530357 AAATACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTGAC 60530298 Query 29712 AGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTT 29771 | | || ||||| | || || ||||| || || || ||||| ||| ||| || Sbjct 60530297 ATTCTCACTGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCCTTAGGGTCTT 60530238 Query 29772 AACAAATATCTGCAT 29786 || ||||||||||| Sbjct 60530237 CACGAATATCTGCAT 60530223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385204439363304