Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq3061 100 2e-16
seq3105 96.9 3e-15
seq3063 96.9 3e-15
seq2997 87.8 1e-12
seq3135 82.4 6e-11
>seq3061
Length=7642621
Score = 100 bits (110), Expect = 2e-16
Identities = 151/213 (71%), Gaps = 5/213 (2%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|||||| | |||||| |||| || ||||||||||| ||||| | | |||| |||
Sbjct 2174630 CAGCACAAGATGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCATCCATC 2174571
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| |||| |||||| | |||| ||||| ||||| || ||||| || || || ||
Sbjct 2174570 TTCCAGTTA----CCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTTATC 2174515
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| ||||||||||||| ||| |||| | | || || || ||
Sbjct 2174514 CTGGATCTTGGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGTGATGGT 2174455
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || | ||||||| ||| ||||||||
Sbjct 2174454 CTTTCCTGTAAGGGTTTTATGAAA-ATCTGCAT 2174423
>seq3105
Length=21505965
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| || ||||||||||| ||||| | | || || |||
Sbjct 7417350 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGTCCATC 7417409
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| |||||| | ||||| | |||| ||||||||||| || ||||| || || || ||
Sbjct 7417410 TTCCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 7417469
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| |||||| |||||| |||| || | | || ||
Sbjct 7417470 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTCGTGGATGATGGT 7417529
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || |||||||| ||||| ||| |||| ||
Sbjct 7417530 CTTCCCTGTAAAGGTTTTTACAAAAATCGGCATCTT 7417565
>seq3063
Length=7952490
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | ||| || ||||| || |||||||||| ||||| | | |||| |||
Sbjct 5877715 CAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCATCCATC 5877656
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| || ||| || | |||| ||||||||||| || ||||| || || || ||
Sbjct 5877655 TTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 5877596
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
||| | || || ||| |||||| ||||| || | || || | || || || ||
Sbjct 5877595 TTGGATCTTGGCCTTTACATTTTCTATAGTGTTGGAGGGCTCAACCTGGAGGGTGATGGT 5877536
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
| || || | |||||| || || |||||||| ||
Sbjct 5877535 CCTCCCCGTAAGGGTTTTTACGAAAATCTGCATCTT 5877500
>seq2997
Length=2481227
Score = 87.8 bits (96), Expect = 1e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAG-AAT 29632
|| ||| | |||||| ||| | || ||||||||||| ||| | | | || | |||
Sbjct 411698 CAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGACAAAGTACATCCAAT 411639
Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692
| || ||||| || |||||| | |||| | ||||||||| || ||||| || || || |
Sbjct 411638 CTTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTAT 411579
Query 29693 CTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752
| || | || || ||| ||||||||||||| || |||| || || || || | |
Sbjct 411578 CCTGGATCTTGGCCTTTACATTTTCTACAGTGTCCGAGGGTTCAACCTCGAG-GTGGTGG 411520
Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
| || || | | |||||| | || ||||| || ||
Sbjct 411519 TCTTCCCCATAACGGTTTTTATGAAAATCTGTATCTT 411483
>seq3135
Length=60673567
Score = 82.4 bits (90), Expect = 6e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 29592 GGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGC 29651
||| ||||| |||||||| || |||| | || ||| || || || |||||||| ||
Sbjct 60530417 GGACTCTTTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCCGGC 60530358
Query 29652 ATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGAC 29711
| ||| || |||| || || || || || || |||||||| | ||| ||||||
Sbjct 60530357 AAATACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTGAC 60530298
Query 29712 AGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTT 29771
| | || ||||| | || || ||||| || || || ||||| ||| ||| ||
Sbjct 60530297 ATTCTCACTGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCCTTAGGGTCTT 60530238
Query 29772 AACAAATATCTGCAT 29786
|| |||||||||||
Sbjct 60530237 CACGAATATCTGCAT 60530223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385204439363304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |