Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq3108 156 3e-32
seq3124 147 2e-29
seq3129 129 4e-24
seq3134 122 7e-22
seq3114 111 1e-18
seq3099 109 4e-18
seq3143 98.7 7e-15
seq3127 89.7 4e-12
>seq3108
Length=23989115
Score = 156 bits (172), Expect = 3e-32
Identities = 462/706 (65%), Gaps = 11/706 (2%)
Strand=Plus/Plus
Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250
|| |||||||||||| || | | || | ||| | ||| | | |||| || | |
Sbjct 13304429 TTGTCAAAATCTTCATCTACG---TGGGTGTCTCCAGCTTTAGATTTCACTTCAAAGATT 13304485
Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310
|||||||||| || | | | |||||| | ||||| | | ||||||| | ||
Sbjct 13304486 CCATCTTCAATAGTGAGGATTGACACATCAAAAATGCCACCTACTAAATCAAAAGTCAGC 13304545
Query 282311 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370
||||| |||| | ||||| || || ||||| |||| ||||||||| |||||
Sbjct 13304546 ACATTTCTTTCAGCTCCAACCTTTTTGTCTAGGCCATAGGCAACAGCAGCAGCTGTTGGC 13304605
Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430
||||| |||||||| || ||||||||||||||||| |||| ||| |||| || || ||
Sbjct 13304606 TCATTGATAATTCTAAATACATTAAGACCAGCAATGTTTCCAGCAACTTTGGTTGCCTGA 13304665
Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCA 282490
| || || || ||||| || || || |||| | || |||| || || || |||
Sbjct 13304666 CACTGAGAGTCATTAAAGTAAGCTGGCTCAGTGACCACAGCATTGGTAACAGTCTTCCCA 13304725
Query 282491 ATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA 282550
| |||||| ||| ||| ||||| || | | | ||| ||||| | || | ||||
Sbjct 13304726 AGATAAGCTTCTGCAATTTCCTTCATCTTTGTCAGCACCATAGATGATACTTTCTTTGGA 13304785
Query 282551 GAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTA 282610
| | ||| | || || ||| |||| || | || | | ||||
Sbjct 13304786 CAGAAGCTCTTTGTCTCTCCTTTGTATTCTACTGGAACTTTGGGCCT----GCCTCATTC 13304841
Query 282611 ATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT-CT 282669
| || | || ||||||| |||||||| || || ||| | ||| | |||||| |
Sbjct 13304842 ACCACCATGAAGGGCCAATGCTTCATATCAGACTGGACAATAGCATCA-TGAAATCTACA 13304900
Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729
||| | | | || |||| |||| || |||| ||| || | ||| |||||| |||
Sbjct 13304901 TCCAGTCAGATGCTTGGCATTGAAAACTGTGTTGGCTGGTTTTATTGCCACTTGATTTTT 13304960
Query 282730 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 282789
|| |||||| |||||| ||| || | | | || || || |||||| | |
Sbjct 13304961 TGCAGCATCTTGAATCAGTCCTTCGGTGTTAATTACAGAGACGTAACTTGGAGTGATTTG 13305020
Query 282790 ATTACCTTGATCATTCGCAATAATTTCAACTTTACC-ATTTTGCCATACACCTACACAAC 282848
||| | |||||||| ||||| || || ||||| || || | | ||| | |||||
Sbjct 13305021 ATTTTCCTGATCATT-GCAATGATCTCCACTTTTCCAATGCTAGAAGACATCCACACAGG 13305079
Query 282849 TAAAAGTTGTTCCTAAATCAATACCAATAGCAATTTTATCTGACAT 282894
|| || || || | |||| |||||| |||| || | ||||||
Sbjct 13305080 AGAAGGTGGTGCCAAGATCAGTACCAACAGCAGTTCCCTTTGACAT 13305125
>seq3124
Length=37078832
Score = 147 bits (162), Expect = 2e-29
Identities = 368/552 (67%), Gaps = 14/552 (3%)
Strand=Plus/Minus
Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836
|||||||| |||||||| || ||||| || | | | | ||| | || ||| ||||||||
Sbjct 25402231 GCACCATAAGCAACAGCCTCGTCAGGGTTGATACTCTTATTCAATTCTTTTCCATTGAAG 25402172
Query 281837 AAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895
|||| | ||||||| ||| | ||| |||||||||| || || || || || |||||
Sbjct 25402171 AAATCTTGTAGAAGTT-TCTGGATCTTGGGAATACGAGTAGAACCACCCACCAAGACAAT 25402113
Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955
||||| | |||||| || || || || | ||| | | | || || || || || ||
Sbjct 25402112 GTCATGGATCTGTGACTTGTCAAGCTTAGCATCTCGCAGAGCCTTCTCCACAGGGTCTAG 25402053
Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015
| | | ||||| ||| | | || ||||| ||| ||| | ||||| | | ||
Sbjct 25402052 AGTGCCACGAAACAGGTCAGCATTCAGCTCTTCAAATCGAGCACGAGTAATGGAGGTATA 25401993
Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075
| || || ||||| | | ||||||| ||||| | | ||| || ||||| ||
Sbjct 25401992 GAAGTCGATCCCTTCATAGAGGGAATCAATCTCAATACTGGCTTGGGTGCTGGAAGAGAG 25401933
Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATT 282131
| | ||||| ||||||||||| || | || | || | || ||| | || | |
Sbjct 25401932 GGTTCTCTTAGCTCGTTCACATGCAGTGCGAAGACGGCGGACAGCTCTCTTGTTCTCACT 25401873
Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACG 282189
||| || | |||| || | |||||| || ||| | | ||| | || | ||
Sbjct 25401872 GAT----GTCCTTCTTATGCTTGCGCTTGAACTCAGCAATAAA--ATGGTTGACCATCCG 25401819
Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249
|| ||||||||||| || || || | || | ||| | |||| | |||||| ||||
Sbjct 25401818 GTTGTCAAAATCTTCTCCACCTAAGTGGGTGTCTCCAGCTGTAGATTTTACTTCAAAAAT 25401759
Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309
||||||||||| || | | | |||||| || ||||| || | ||||||||| ||
Sbjct 25401758 TCCATCTTCAATAGTGAGGATTGACACATCAAAAGTGCCACCTCCTAAATCAAAAATCAG 25401699
Query 282310 TACATTCATTTC 282321
|| || ||||
Sbjct 25401698 CACGTTTCTTTC 25401687
Score = 116 bits (128), Expect = 3e-20
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || | ||||| |||| ||||||||| ||||| ||||| |||||||| | |||
Sbjct 25401594 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCTGTTGGCTCATTGATAATTCTAAGTACA 25401535
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|||||||||||||| | || |||||||| || || || | || || || ||||||||
Sbjct 25401534 TTAAGACCAGCAATGGTCCCAGCATCTTTGGTAGCCTGGCGCTGAGAGTCATTAAAATAA 25401475
Query 282452 GCAGGAACAGTAATAACGGCAT 282473
|| || ||||||| || ||||
Sbjct 25401474 GCTGGCACAGTAACCACAGCAT 25401453
>seq3129
Length=43247874
Score = 129 bits (142), Expect = 4e-24
Identities = 438/679 (65%), Gaps = 44/679 (6%)
Strand=Plus/Minus
Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250
|| |||||||| || || || || || | |||| |||| | | |||| ||| | |
Sbjct 28183376 TTGTCAAAATCATCTCCACCTAAGGGGGTGTCACCTGCTGTAGATTTCACTTTGAAGATT 28183317
Query 282251 CCATCTTCAAGAGACAAAAGAGTA---ACATCATGGGTTCCACCACCCATATCAAAAATA 282307
||| ||||| | || || | |||||| || | ||| || | |||||||||
Sbjct 28183316 CCACCTTCA---GTCATGAGGATTGACACATCAAAAGTGCTACCTCCTAAATCAAAAATC 28183260
Query 282308 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367
|||||||| |||| | ||||| || | ||||| |||| ||||||
Sbjct 28183259 AGTACATTTCTTTCAACTCCAACCTTTTTGTCTAAGCCATAAGCAATAGCAGC------- 28183207
Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427
||||| ||||||| | ||||||||||||||||| |||| |||||||| || |
Sbjct 28183206 ---TCATTGATAATTCCAAGTACATTAAGACCAGCAATGGTTCCAGCATCTTTGGT-TCC 28183151
Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487
|| | || || || ||||| || || || |||||| || |||| || || ||
Sbjct 28183150 TGACGCTGAGAGTCATTAAAGTAAGCTGGCCCAGTAACCACAGCATTGGTAACAGTCTTC 28183091
Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547
|||| ||| ||| ||| |||| |||| || | | | | || || | | |||
Sbjct 28183090 CCAAGATACGCGTCTGCAGTTTCCTTCACCTTTGTCAGCACTGTAGAAGACACCTTCTCT 28183031
Query 282548 GGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 282607
||| || | || ||| | || ||| ||||| || | || | || ||
Sbjct 28183030 GGACAAACT--CT----TTCTCTCTG-TATTCTACTTGAACCTTGGGCCTGCCTGCATCA 28182978
Query 282608 TTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 282667
|| | || |||| ||||||| |||| | | || || ||| | |||| | || |
Sbjct 28182977 TTCACCACCATAAAGGGCCAATGCTTCACACCAGACTGGACAATAGCATCATCATCATAT 28182918
Query 282668 CTA---CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGA 282724
||| ||||| | |||| ||||||||| || ||||| || || ||||| |||||
Sbjct 28182917 CTACGTCCAATCAGATGTTTGGCATCAAAAGCTGTGTTGGTGGGGTTCACTGCCACTTGA 28182858
Query 282725 TATTTGGCTGCATCTCCAATCAGATGTTCTG-----TCTCTG--------TAAATGAA-- 282769
| ||| || ||||||| || || |||| || |||||| | | ||||
Sbjct 28182857 TTTTTTGCAGCATCTCTGATGAGTTGTTTTGCAGTATCTCTGATCAATCTTTAGTGAAAG 28182798
Query 282770 --ACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCAT 282827
||||| |||||| || |||| || |||||||| ||||| || || ||||| ||||
Sbjct 28182797 CGACATAACTTGGAGTGGTTTGATTTCCCTGATCATTGGCAATTATCTCCACTTTTCCAT 28182738
Query 282828 TTTGCCATACACCTACACA 282846
|| | ||||| | |||
Sbjct 28182737 GCTGGGAGACACCCATACA 28182719
>seq3134
Length=59225736
Score = 122 bits (134), Expect = 7e-22
Identities = 771/1227 (63%), Gaps = 45/1227 (4%)
Strand=Plus/Minus
Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722
||||| | |||| || ||||| |||||||||||||||||||||||| | || |
Sbjct 50880721 GTCATGACTCCACTAGGAGTTTCAGTACCAAGAGAAAGAGGAGTGACATCCAAAAGCAGC 50880662
Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782
| || ||||| |||||| | | ||| ||||| || || |||| ||| | ||||
Sbjct 50880661 AAATCTTGAACATTTTCAGACTTATCTCCAGATAGAATGGCAGCCTGAACAGCTGAACCA 50880602
Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-T 281841
|| | |||||| || ||||| || | | | ||| |||| ||| ||||||||||| | |
Sbjct 50880601 TAAGTAACAGCCTCCTCAGGGTTGATGCTCTTATTCAGTTCTTTTCCATTGAAAAAGTCT 50880542
Query 281842 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901
|| | || |||| | ||| || ||| || || || || ||| ||| | |||||
Sbjct 50880541 TGTAGGAGCTTGT-GGATCTTGGGGATATGAATAGAGCCACCCACTTGGACATTGTCATG 50880483
Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961
| |||| | || || ||||| | ||| | | | || || | || || ||| |
Sbjct 50880482 GATCTGTCACTTGTCAAGTTTGGCATCTTGAAGAGCCTTCTCCTCAGGGTCCAGAGTGCC 50880423
Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 282021
| || | ||| | || ||||| || | ||| | ||||| | |||| ||
Sbjct 50880422 ACAGAATAGGTCCACATTCAGCTCTTCAAACTGAGCACAAGTAATGGAGACACAGATGTC 50880363
Query 282022 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 282081
||||||||| | | ||||||| ||| || | | ||| | ||||| | |
Sbjct 50880362 AATTCCTTCATAGAGGGAATCAATCTCAGTCCTGGCTTGGATGCTGGAAGAGAAGATTCT 50880303
Query 282082 TTTAGCACGTTCACATGCTGTCCTTAG-TCTTCGTAAGG---CTTTTGCTGATTGATTCA 282137
||||| |||||||||| || || | | ||| ||| | || | ||||
Sbjct 50880302 CTTAGCTTGTTCACATGCAGTATGAAGATGGCAGACAGGTCTCTTGTTCTCACTGAT--- 50880246
Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197
|| | | |||| || ||||| || || | | | | | | || ||||
Sbjct 50880245 -ATTTTTCTTATGCTTGTGATTGAATTCAGTAATAAAACGATTGATCGTTTGGTTGTCAA 50880187
Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257
|||||||| || | | |||| || | |||||| | | || || | || ||| |
Sbjct 50880186 AATCTTCATCT---ACATGGGTATCTCTAGCTGTAGCTTTCAGTTCAAAGATTCTATCAT 50880130
Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317
||| || | | | |||||| || | || |||||| || | ||||
Sbjct 50880129 CAATAGTGAGGAATGACACATCAAAAGT--------GCTGATAAAAAATCAGCATATTCC 50880078
Query 282318 TTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 282377
|||| | ||||| | | ||||| |||| ||||||||| |||| ||||| |
Sbjct 50880077 TTTCAGCTCCAACCTTTTTGTTTAAGCCATAGGCAATAGCAGCAGCTGTTGACTCATTGA 50880018
Query 282378 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 282437
||||||| | ||||||||||||||||| |||| | | || | || || || |
Sbjct 50880017 TAATTCTAAGTACATTAAGACCAGCAATGGTTCCAGTACCT----TAGCCTGATGCTGAG 50879962
Query 282438 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497
| || ||||| | || ||||||| ||| ||| || || || |||| ||||
Sbjct 50879961 AGTCATTAAA-----CTGGCACAGTAACAACAGCACTGGTAACAGTCTTCCCAAGATAAA 50879907
Query 282498 CGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATT 282557
|| ||| ||| ||||| || ||| |||| || | | ||| | | |
Sbjct 50879906 CGTCTGCAATTTCCTTCATCTTTGTTAGCATCA-----GACACCTCCACTGTATAGAAGC 50879852
Query 282558 GCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT-AATAACT 282616
||| | || ||| ||| ||||| || | ||| | || |||| || |
Sbjct 50879851 TCTTTGTCTCTCTTTTGTATTCTACTTGAACCT-TGG--GCCTTCCTGCATTGTATGCCA 50879795
Query 282617 T--TAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT-CTACCA 282673
| | || ||||||| |||||||| || |||||| ||| ||||| || | |||
Sbjct 50879794 TCATGAAGGGCCAATGCTTCATATCAGACTGAACAACAGCATCA-TAAAAGCTACATCCA 50879736
Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733
|| | | || |||| |||| || |||||||| || || |||||| ||| ||
Sbjct 50879735 ATAAGATGCTTGGCATTGAAAACTGTGTTGGTTGGGTTCGTTGTCACTTGATTTTTTGCA 50879676
Query 282734 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 282793
|||||||||||||| |||| || | | || | | ||| |||| | || | |||
Sbjct 50879675 GCATCTCCAATCAGTTGTTTAGTGTTGGCGAAAGCAGTATAACTTGGAATAGTTCAATTT 50879616
Query 282794 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAA 282853
|| |||||||| | || || || ||||| | | || | ||||| |||||| |
Sbjct 50879615 CCCTGATCATTGG--ATTATCTCCACTTTTCAGTGCTGGAAGACACCCACACAAGAGTAG 50879558
Query 282854 GTTGTTCCTAAATCAATACCAATAGCA 282880
| || || | |||||| |||| ||||
Sbjct 50879557 GCAGTGCCAAGATCAATGCCAACAGCA 50879531
>seq3114
Length=26790417
Score = 111 bits (122), Expect = 1e-18
Identities = 170/240 (71%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 281672 CCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGA 281731
|||||||| ||||| | |||||||||||||| || |||||| | || | | || |||
Sbjct 7927027 CCACCAGCCGTTTCAATACCAAGAGAAAGAGAAGAGACATCTAAAAGCAGCAAATCTTGG 7927086
Query 281732 AGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 281791
| |||| | | | ||| ||||| || || |||| ||| |||||||| |||||
Sbjct 7927087 ACATTTTTAGACTTGTCTCCAGATAGAATGGCAGCCTGAACAGCTGCACCATAAACAACA 7927146
Query 281792 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGT 281851
||||||||||| || | | | | | | || ||| |||||||| || | | ||||||
Sbjct 7927147 GCTTCATCAGGGTTGATGCTCTTACTCAATTCTTTTCCATTGAAGAAGTCTTGTAGAAGT 7927206
Query 281852 TGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGA 281910
| ||| | ||| |||||| ||| || | || || | ||||| ||||| | ||||||
Sbjct 7927207 T-TCTGGATCTTGGGAATATGAGTAGAACTACCCACCAGGACAATGTCATGGATCTGTGA 7927265
Score = 100 bits (110), Expect = 2e-15
Identities = 122/165 (74%), Gaps = 1/165 (1%)
Strand=Plus/Plus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || | | ||| |||| ||||||||| |||| || ||| |||||||| | |||
Sbjct 7927638 TTTTTGTCTAAGCAATAGGCAATAGCAGCAGCTGTTGCTT-ATTGATAATTCTAAGTACA 7927696
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|||||||||||||| |||| |||||| | || || || || ||||| ||||| ||
Sbjct 7927697 TTAAGACCAGCAATAGTTCCAGCATCTGTGGTTGCCTGATGCTGAGAATCATTAAAGTAA 7927756
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAA 282496
|| || ||||||| || |||| || || || |||| ||||
Sbjct 7927757 GCTGGCACAGTAACCACAGCATTGGTAACAGTGTTCCCAAGATAA 7927801
>seq3099
Length=15920349
Score = 109 bits (120), Expect = 4e-18
Identities = 240/360 (67%), Gaps = 0/360 (0%)
Strand=Plus/Minus
Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250
|| ||||||||||| || || || | || | || | ||| | | |||| || | |
Sbjct 2306941 TTGTCAAAATCTTCTCCACCTAAGTGGGTGTCACCAGCTATAGATTTCACTTCAAAGATT 2306882
Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310
|||||||||| || | | | |||||| || ||||| || | || |||||| ||
Sbjct 2306881 CCATCTTCAATAGTGAGGACTGACACATCAAAAGTGCCACCTCCTAAATAAAAAATCAGC 2306822
Query 282311 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370
||||| |||| | ||||| || | ||||| |||| ||||||| | |||||
Sbjct 2306821 ACATTTCTTTCAGCTCCAATCTTTTTCTCTAAGCCATAGGCAATAGCAGCATCTGTTGGC 2306762
Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430
||||| |||||||| | ||||||||||||||||| | | |||| ||| || || ||
Sbjct 2306761 TCATTGATAATTCTAAGTACATTAAGACCAGCAATGGCTGCAGCATTTTTGGTTGCCTGA 2306702
Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCA 282490
|| || ||||| || || || ||||||| || ||| | || || |||
Sbjct 2306701 TGATGACGGTCATTAAAGTAAGCTGGCACAGTAACTACAGCAATGATAACAGTCTTCCCA 2306642
Query 282491 ATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA 282550
| |||||| | | |||| ||||| || | | | ||| ||||| | | ||||||
Sbjct 2306641 AGATAAGCTTCTTCAGTTTCCTTCATCTTTGTCAGCACCATAGATGATACGTCCTCTGGA 2306582
Score = 98.7 bits (108), Expect = 7e-15
Identities = 184/262 (70%), Gaps = 10/262 (4%)
Strand=Plus/Minus
Query 281672 CCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACAT-CAACTAGGACAATATTTTG 281730
|||||||| ||||| | || |||||||||||||||||||| |||| | ||| || |||
Sbjct 2307415 CCACCAGCAGTTTCAATACTAAGAGAAAGAGGAGTGACATCCAACAACAGCAA-ATCTTG 2307357
Query 281731 AA-GTTTTTCATCAGTTTGAC--CAACAAGAATAGCTGCTTGAATAGCAGCACCATATGC 281787
|| |||||| | ||| | ||| || || || || || ||||| | |||||| |
Sbjct 2307356 AACGTTTTTGGAC---TTGTCTTCAAATAGGATGGCAGCCTGGATAGCTGAACCATAAAC 2307300
Query 281788 AACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAG 281847
|||||| |||||||| || | | | || | || ||| |||||||| || | | |
Sbjct 2307299 AACAGCCTCATCAGGGTTGATGCTCTTCTTCAATTATTTTCCATTGAAGAAGTCTTGTGG 2307240
Query 281848 AAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCT 281906
||| | ||| | ||| || |||| || | || || || | ||||| ||||| | ||
Sbjct 2307239 AAGCT-TCTGGATCTTGGGGATACAAGTAAAACCACCCACCAGGACAATGTCATGAATCT 2307181
Query 281907 GTGATTTATCCAGTTTTGAATC 281928
|||| || || || || | |||
Sbjct 2307180 GTGACTTGTCAAGCTTAGCATC 2307159
>seq3143
Length=88675666
Score = 98.7 bits (108), Expect = 7e-15
Identities = 183/263 (70%), Gaps = 7/263 (3%)
Strand=Plus/Plus
Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722
||||| | |||||||| |||| | ||||| |||||||||||||||||| | || |
Sbjct 45737275 GTCATGACTCCACCAGCAATTTCAATACCAACAGAAAGAGGAGTGACATCCAAGAGCAGC 45737334
Query 281723 ATATTTTGA--AGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 281780
| || |||| ||||| | ||||| || ||| | | ||| |||| ||| ||||
Sbjct 45737335 AAATCTTGAATAGTTTCAGACTTGTTTG--CAGATAGATTGGTTGCCTGAACAGCTGCAC 45737392
Query 281781 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840
|||| ||||||| |||||| | || | | | ||| | || ||| ||| ||||||| |
Sbjct 45737393 CATAATCAACAGCCTCATCAAGGTTGATCCTCTTATTCAATTCTTTTCCA-TGAAAAAGT 45737451
Query 281841 TTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899
| | ||||| | ||| | ||| || |||| | || || || || | ||||| |
Sbjct 45737452 CTTATAGAAGCT-TCTGGATCTTGGGGATACTGGTAGAACCACCCACCAGGACAATGCTA 45737510
Query 281900 TGCACCTGTGATTTATCCAGTTT 281922
|| | |||||| || || |||||
Sbjct 45737511 TGGATCTGTGACTTGTCTAGTTT 45737533
Score = 93.3 bits (102), Expect = 3e-13
Identities = 161/228 (71%), Gaps = 7/228 (3%)
Strand=Plus/Plus
Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC---TTTGTCTTGG 282331
|||||| || ||| ||| | || |||||| || ||||| |||| | |||
Sbjct 45737803 ACATCAAAAGTAACACTACCTAAATAAAAAATCAGCACATTTCTTTCAGCTCCAACTTT- 45737861
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|||| ||| | | ||| |||| ||||||||| ||||||||||| |||||||| | |||
Sbjct 45737862 TTTTAATCTAAGCAATAAGCAATAGCAGCAGCTGTTGGTTCATTGATAATTCTGAGTACA 45737921
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
||||||||||||| || | |||||||| || || || || | || || |||||
Sbjct 45737922 ATAAGACCAGCAATGGTTTCAGCATCTTTGGTTGCCTGATGCTGAAAGTCATT-AAATAA 45737980
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT-CCAATATAAGC 282498
|| || ||||| | || ||| || || | |||| |||| |||||
Sbjct 45737981 GCTGGTACAGTGACCACAACAT-TGGTAATAGTTTTCCCAAGGTAAGC 45738027
>seq3127
Length=41527808
Score = 89.7 bits (98), Expect = 4e-12
Identities = 182/266 (68%), Gaps = 7/266 (3%)
Strand=Plus/Minus
Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722
||||| | ||| |||| || | | ||||||||||||||||| ||||| | || | |
Sbjct 10662855 GTCATGACTCCAGCAGCAATTGCAATACCAAGAGAAAGAGGAGCAACATCCAAAAGCAGA 10662796
Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782
| |||||||| |||| | | | ||| ||||| ||||| || | ||| ||||||
Sbjct 10662795 A-ATTTTGAACATTTTTAGACTTGTTTCCAGATAGAATGGCTGCCTGTAAAGCTGCACCA 10662737
Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842
| ||| |||| |||| || ||| ||| | ||| || ||| ||| |||| || | |
Sbjct 10662736 TGAGCAGCAGCCTCATTAGCATTGACA----CTCTTAATTATTTTCCACTGAAGAAGTCT 10662681
Query 281843 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 281902
| |||| | | | | ||| || ||| | | || || || |||| ||||| | ||
Sbjct 10662680 TACAGAAACT-TATGAACTT-GGGATATGGGTAGAACCACCCACTAGGACAATGTTATAG 10662623
Query 281903 ACCTGTGATTTATCCAGTTTTGAATC 281928
| |||||| || || ||||| | |||
Sbjct 10662622 ATCTGTGACTTGTCTAGTTTAGCATC 10662597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740476042886544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |