Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq3018 84.2 2e-11 >seq3018 Length=3443724 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/147 (74%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| |||||||| | || || ||| | || |||| || |||| || | ||| Sbjct 3259541 TCCAGCATCTGGGGGCCCACATGTGACGGCCTGGACCGCATCGTGGAGCGCTGCGCCCTG 3259600 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA-GCTTGGT 21240 || ||||| || ||||| |||||||| | ||||| ||||||||||| |||| ||| | Sbjct 3259601 CCCGAGCTGCACGTGGGTGACTGGCTGCTCTTTGAGAACATGGGCGCCTACACTGTTGCT 3259660 Query 21241 -CAGCTCTTCAACCTTTAACGGCTTCC 21266 ||| | ||||| || || ||||||| Sbjct 3259661 GCAG--CCTCAACTTTCAATGGCTTCC 3259685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463527382657920