Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq3082 170 4e-37
seq3105 132 9e-26
seq3063 123 5e-23
seq3061 118 2e-21
seq3135 100 6e-16
seq2997 100 6e-16
seq3080 98.7 2e-15
seq3000 91.5 3e-13
seq3109 86.0 1e-11
seq3139 84.2 4e-11
>seq3082
Length=10725151
Score = 170 bits (188), Expect = 4e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || |||| ||| || || | |||||||||||| |||||||| || || || |||||
Sbjct 1251691 CCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAA 1251632
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | ||| ||||| || || || || |||||||| || || || || || |||||
Sbjct 1251631 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 1251572
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||| ||||| || ||||| || || ||||| ||||| || ||| | || || |||
Sbjct 1251571 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACT 1251512
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| || || |||||||| |||| ||||| || || ||||||||
Sbjct 1251511 TCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465
Score = 159 bits (176), Expect = 7e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| ||||||| ||||| || | ||||||||| || |||||||| || || || |||||
Sbjct 1251235 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1251176
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | ||| ||||| || || || || |||||||| || || || || || || ||
Sbjct 1251175 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGA 1251116
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||||||||| || ||||| || || ||||| ||||| || || | || || ||
Sbjct 1251115 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 1251056
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||||| || || |||||||| |||| || || || || || ||||||
Sbjct 1251055 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATT 1251008
>seq3105
Length=21505965
Score = 132 bits (146), Expect = 9e-26
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| || || || || || || |||||||| | | | | || ||||| ||||||
Sbjct 7417360 TGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGTCCATCTTCCAGTTGT 7417419
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
| |||||||||| || ||||| ||||| ||||| |||||||||||||| || |||||
Sbjct 7417420 GTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 7417479
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||||||||||| || || || ||||| || | || ||||| |||||
Sbjct 7417480 GCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTCGTGGATGATGGTCTTCCCTGTA 7417539
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
|| || |||||||| ||| ||||
Sbjct 7417540 AAGGTTTTTACAAAAATCGGCAT 7417562
>seq3063
Length=7952490
Score = 123 bits (136), Expect = 5e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| || || | || || || |||||||| | | | | || ||||| |||||
Sbjct 5877705 TGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCATCCATCTTCCAGTTGC 5877646
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| ||| ||||||| || ||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct 5877645 TTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGGATCTTG 5877586
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||||||||||| || || | || || || | | || || ||| | || ||
Sbjct 5877585 GCCTTTACATTTTCTATAGTGTTGGAGGGCTCAACCTGGAGGGTGATGGTCCTCCCCGTA 5877526
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| || ||||| || ||||||||
Sbjct 5877525 AGGGTTTTTACGAAAATCTGCAT 5877503
>seq3061
Length=7642621
Score = 118 bits (130), Expect = 2e-21
Identities = 149/203 (73%), Gaps = 5/203 (2%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| | || || || || || |||||||| | | | | || ||||| ||||
Sbjct 2174620 TGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCATCCATCTTCCAGTTA- 2174562
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
||||||||||| || ||||||||||| ||||| |||||||||||||| || |||||
Sbjct 2174561 ---CCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 2174505
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||||||||||| | || || |||||| | | | || || ||||| |||||
Sbjct 2174504 GCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGTGATGGTCTTTCCTGT- 2174446
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
|| | |||| || ||||||||
Sbjct 2174445 AAGGGTTTTATGAAAATCTGCAT 2174423
>seq3135
Length=60673567
Score = 100 bits (110), Expect = 6e-16
Identities = 147/208 (71%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 82607 GTGCAGAGTAG----ATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTA 82662
|||||| |||| | |||||||| || || || || || ||| | | |||||| || |
Sbjct 60530430 GTGCAGGGTAGTGGGACTCTTTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCA 60530371
Query 82663 GTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAA 82722
| ||||| || ||||| | || | || || || || || |||||||| ||||| |
Sbjct 60530370 GCTGTTTGCCGGCAAATACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGA 60530311
Query 82723 TCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGC 82782
| || ||||| ||||| ||| | || || | || || || || | || || |||||||
Sbjct 60530310 TTTTGGCTTTGACATTCTCACTGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGC 60530251
Query 82783 CTGTCAACGTCTTTACAAATATCTGCAT 82810
| | | ||||| || |||||||||||
Sbjct 60530250 CCCTTAGGGTCTTCACGAATATCTGCAT 60530223
>seq2997
Length=2481227
Score = 100 bits (110), Expect = 6e-16
Identities = 104/135 (77%), Gaps = 1/135 (1%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG-TCTTCTAGTTG 82666
|| ||||| | || || || || || ||| |||| | | | | || ||||| |||||
Sbjct 411688 TGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGACAAAGTACATCCAATCTTCCAGTTG 411629
Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726
|| ||||||||||| || | ||| ||||| ||||| |||||||||||||| || |||||
Sbjct 411628 CTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 411569
Query 82727 TGCTTTTACATTTTC 82741
|| |||||||||||
Sbjct 411568 GGCCTTTACATTTTC 411554
>seq3080
Length=10554711
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| || || || || || || |||||||| | ||| || ||||| |||||
Sbjct 4932310 TGAAGAGTCGACTCCTTTTGAATGTTGTAATCAGACAAAATATGTCCATCTTCCAGTTGC 4932369
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || | |||||| || |||| ||||| ||| | ||| |||||||||| || |||||
Sbjct 4932370 TTACCTGTAAAGATCAGCTTTTGCTGATCAGGAAGAATTGCTTCCTTATCCTGGATCTTG 4932429
Query 82728 GCTTTTACATTTTCAAT 82744
|| ||||||||||| ||
Sbjct 4932430 GCCTTTACATTTTCTAT 4932446
>seq3000
Length=2535745
Score = 91.5 bits (100), Expect = 3e-13
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 82632 TTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGT 82691
|| |||||||| | | | | || ||||| | ||| | |||||||||| || |||||
Sbjct 1110527 TTGTAATCAGACAAAGTACATCCATCTTCCACTTGCATAACAGCAAAGATCAGCCTTTGA 1110468
Query 82692 TGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTAT 82749
|||| ||||| |||||||||||||| ||||||| || |||| |||||| || ||||
Sbjct 1110467 TGATTAGGAGGAATTCCTTCCTTATCCTGAATCTCAGCCTTTATATTTTCTATAGTAT 1110410
>seq3109
Length=24440124
Score = 86.0 bits (94), Expect = 1e-11
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 82590 CTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATT 82649
|||| | ||| |||| ||||||||| | ||||| | || || || ||||| ||| |
Sbjct 19092326 CTCAGGCACAGGACTAGGTGCAGAGTGTACCCTTTCAGGATGTTGTAGTCAGAAAGAGTG 19092267
Query 82650 CTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCT 82709
| ||| ||||| | || || || || ||| || || ||||| ||| ||| || |||
Sbjct 19092266 CAACCATCTTCCAACTGCTTGCCCACATGGATGAGCCTCTGTTGCCCTGCAGGAATACCT 19092207
Query 82710 TCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAA 82769
|| ||| | ||||| || || || ||||| || | || | || || || ||||
Sbjct 19092206 TCGTTAGCCTGAATGTTGGCCTTCACATTCGCAGTGGTGTTGCAGGGCTCCACCTCCAGG 19092147
Query 82770 GTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|| | ||||||||||| | ||| | || || | ||||||
Sbjct 19092146 GTGGTGGTCTTGCCTGTAAGCGTTTCTATGAAGCTTTGCATT 19092105
>seq3139
Length=61496919
Score = 84.2 bits (92), Expect = 4e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368
|||| ||||| ||||| ||| |||||||||| || ||||| ||||||||| | || ||||
Sbjct 52687203 AAGCGTTTTTTGGAGCCCAGATGAATTCCTTTATTCATGTGATTATGTATTCATACTATG 52687144
Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTA 60428
| | | || | ||| || | || | |||||| | ||||||||||| || || || |
Sbjct 52687143 GATTAACTGCATTTGGCCCGTGGATTCAGAAGTATCTCTGGTGGAAGCGGTACCTGACCA 52687084
Query 60429 T 60429
|
Sbjct 52687083 T 52687083
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981787649545816
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