Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3082 170 4e-37 seq3105 132 9e-26 seq3063 123 5e-23 seq3061 118 2e-21 seq3135 100 6e-16 seq2997 100 6e-16 seq3080 98.7 2e-15 seq3000 91.5 3e-13 seq3109 86.0 1e-11 seq3139 84.2 4e-11 >seq3082 Length=10725151 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| || || | |||||||||||| |||||||| || || || ||||| Sbjct 1251691 CCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAA 1251632 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||| ||||| || || || || |||||||| || || || || || ||||| Sbjct 1251631 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 1251572 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| ||||| || ||||| || || ||||| ||||| || ||| | || || ||| Sbjct 1251571 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACT 1251512 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 1251511 TCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| ||||| || | ||||||||| || |||||||| || || || ||||| Sbjct 1251235 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1251176 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||| ||||| || || || || |||||||| || || || || || || || Sbjct 1251175 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGA 1251116 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || ||||| ||||| || || | || || || Sbjct 1251115 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 1251056 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || |||||||| |||| || || || || || |||||| Sbjct 1251055 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATT 1251008 >seq3105 Length=21505965 Score = 132 bits (146), Expect = 9e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || || |||||||| | | | | || ||||| |||||| Sbjct 7417360 TGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACGTCCATCTTCCAGTTGT 7417419 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 | |||||||||| || ||||| ||||| ||||| |||||||||||||| || ||||| Sbjct 7417420 GTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 7417479 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || || ||||| || | || ||||| ||||| Sbjct 7417480 GCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTCGTGGATGATGGTCTTCCCTGTA 7417539 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || || |||||||| ||| |||| Sbjct 7417540 AAGGTTTTTACAAAAATCGGCAT 7417562 >seq3063 Length=7952490 Score = 123 bits (136), Expect = 5e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || | || || || |||||||| | | | | || ||||| ||||| Sbjct 5877705 TGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCATCCATCTTCCAGTTGC 5877646 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||| ||||||| || ||||| ||||| ||||| ||||||||||||||||| ||||| Sbjct 5877645 TTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGGATCTTG 5877586 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || | || || || | | || || ||| | || || Sbjct 5877585 GCCTTTACATTTTCTATAGTGTTGGAGGGCTCAACCTGGAGGGTGATGGTCCTCCCCGTA 5877526 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || ||||| || |||||||| Sbjct 5877525 AGGGTTTTTACGAAAATCTGCAT 5877503 >seq3061 Length=7642621 Score = 118 bits (130), Expect = 2e-21 Identities = 149/203 (73%), Gaps = 5/203 (2%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| | || || || || || |||||||| | | | | || ||||| |||| Sbjct 2174620 TGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCATCCATCTTCCAGTTA- 2174562 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 ||||||||||| || ||||||||||| ||||| |||||||||||||| || ||||| Sbjct 2174561 ---CCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 2174505 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| | || || |||||| | | | || || ||||| ||||| Sbjct 2174504 GCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGTGATGGTCTTTCCTGT- 2174446 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || | |||| || |||||||| Sbjct 2174445 AAGGGTTTTATGAAAATCTGCAT 2174423 >seq3135 Length=60673567 Score = 100 bits (110), Expect = 6e-16 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 82607 GTGCAGAGTAG----ATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTA 82662 |||||| |||| | |||||||| || || || || || ||| | | |||||| || | Sbjct 60530430 GTGCAGGGTAGTGGGACTCTTTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCA 60530371 Query 82663 GTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAA 82722 | ||||| || ||||| | || | || || || || || |||||||| ||||| | Sbjct 60530370 GCTGTTTGCCGGCAAATACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGA 60530311 Query 82723 TCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGC 82782 | || ||||| ||||| ||| | || || | || || || || | || || ||||||| Sbjct 60530310 TTTTGGCTTTGACATTCTCACTGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGC 60530251 Query 82783 CTGTCAACGTCTTTACAAATATCTGCAT 82810 | | | ||||| || ||||||||||| Sbjct 60530250 CCCTTAGGGTCTTCACGAATATCTGCAT 60530223 >seq2997 Length=2481227 Score = 100 bits (110), Expect = 6e-16 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG-TCTTCTAGTTG 82666 || ||||| | || || || || || ||| |||| | | | | || ||||| ||||| Sbjct 411688 TGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGACAAAGTACATCCAATCTTCCAGTTG 411629 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || ||||||||||| || | ||| ||||| ||||| |||||||||||||| || ||||| Sbjct 411628 CTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 411569 Query 82727 TGCTTTTACATTTTC 82741 || ||||||||||| Sbjct 411568 GGCCTTTACATTTTC 411554 >seq3080 Length=10554711 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || || |||||||| | ||| || ||||| ||||| Sbjct 4932310 TGAAGAGTCGACTCCTTTTGAATGTTGTAATCAGACAAAATATGTCCATCTTCCAGTTGC 4932369 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || | |||||| || |||| ||||| ||| | ||| |||||||||| || ||||| Sbjct 4932370 TTACCTGTAAAGATCAGCTTTTGCTGATCAGGAAGAATTGCTTCCTTATCCTGGATCTTG 4932429 Query 82728 GCTTTTACATTTTCAAT 82744 || ||||||||||| || Sbjct 4932430 GCCTTTACATTTTCTAT 4932446 >seq3000 Length=2535745 Score = 91.5 bits (100), Expect = 3e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 82632 TTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGT 82691 || |||||||| | | | | || ||||| | ||| | |||||||||| || ||||| Sbjct 1110527 TTGTAATCAGACAAAGTACATCCATCTTCCACTTGCATAACAGCAAAGATCAGCCTTTGA 1110468 Query 82692 TGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTAT 82749 |||| ||||| |||||||||||||| ||||||| || |||| |||||| || |||| Sbjct 1110467 TGATTAGGAGGAATTCCTTCCTTATCCTGAATCTCAGCCTTTATATTTTCTATAGTAT 1110410 >seq3109 Length=24440124 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 82590 CTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATT 82649 |||| | ||| |||| ||||||||| | ||||| | || || || ||||| ||| | Sbjct 19092326 CTCAGGCACAGGACTAGGTGCAGAGTGTACCCTTTCAGGATGTTGTAGTCAGAAAGAGTG 19092267 Query 82650 CTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCT 82709 | ||| ||||| | || || || || ||| || || ||||| ||| ||| || ||| Sbjct 19092266 CAACCATCTTCCAACTGCTTGCCCACATGGATGAGCCTCTGTTGCCCTGCAGGAATACCT 19092207 Query 82710 TCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAA 82769 || ||| | ||||| || || || ||||| || | || | || || || |||| Sbjct 19092206 TCGTTAGCCTGAATGTTGGCCTTCACATTCGCAGTGGTGTTGCAGGGCTCCACCTCCAGG 19092147 Query 82770 GTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | ||||||||||| | ||| | || || | |||||| Sbjct 19092146 GTGGTGGTCTTGCCTGTAAGCGTTTCTATGAAGCTTTGCATT 19092105 >seq3139 Length=61496919 Score = 84.2 bits (92), Expect = 4e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368 |||| ||||| ||||| ||| |||||||||| || ||||| ||||||||| | || |||| Sbjct 52687203 AAGCGTTTTTTGGAGCCCAGATGAATTCCTTTATTCATGTGATTATGTATTCATACTATG 52687144 Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTA 60428 | | | || | ||| || | || | |||||| | ||||||||||| || || || | Sbjct 52687143 GATTAACTGCATTTGGCCCGTGGATTCAGAAGTATCTCTGGTGGAAGCGGTACCTGACCA 52687084 Query 60429 T 60429 | Sbjct 52687083 T 52687083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981787649545816