Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2965 147 2e-30 seq3082 143 3e-29 seq3135 114 1e-20 seq3063 89.7 5e-13 seq3143 86.0 6e-12 seq3126 84.2 2e-11 >seq2965 Length=1497097 Score = 147 bits (162), Expect = 2e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| | ||| | ||| || ||||||||||| Sbjct 1204083 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCC 1204024 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| ||||||||| || |||||||| |||||||| |||||| ||| Sbjct 1204023 AGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTT 1203964 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || |||| ||||| ||| ||||| || || || Sbjct 1203963 GACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTGCCAGTGAGGGT 1203904 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 1203903 CTTCACGAAGATCTGCATG 1203885 Score = 145 bits (160), Expect = 7e-30 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || | ||| | ||| || ||||||||||| Sbjct 1203855 GGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCC 1203796 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| ||||||||| || |||||||| |||||||| |||||| ||| Sbjct 1203795 AGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTT 1203736 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || |||| ||||| ||| ||||| || || || Sbjct 1203735 GACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTGCCAGTGAGGGT 1203676 Query 133643 TTTTACGAAAATCTGCAT 133660 |||||||| |||||||| Sbjct 1203675 CTTTACGAAGATCTGCAT 1203658 >seq3082 Length=10725151 Score = 143 bits (158), Expect = 3e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || | ||| ||| | || || ||||||||||| Sbjct 1251205 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCA-TCTTCCAGCTGCTTGCC 1251147 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| || || ||||||||||| || |||||| ||| Sbjct 1251146 TGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCCTGGATCTTGGCCTT 1251087 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| |||||| |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 1251086 CACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAGGGT 1251027 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| || ||||| Sbjct 1251026 TTTCACGAAGATTTGCAT 1251009 Score = 138 bits (152), Expect = 1e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || | ||| ||| | || || ||||||||||| Sbjct 1251433 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCA-TCTTCCAGCTGCTTGCC 1251375 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| ||||| |||||||| || || |||||| ||| Sbjct 1251374 TGCAAAGATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTT 1251315 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| |||||| |||||||||| || | |||| ||| ||||| |||||||| Sbjct 1251314 CACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGAGT 1251255 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1251254 CTTCACGAAGATCTGCAT 1251237 Score = 134 bits (148), Expect = 1e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| || | ||| ||| | || || ||||||||||| Sbjct 1251661 GTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCA-TCTTCCAGCTGCTTGCC 1251603 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| ||||| |||||||| || || |||||| ||| Sbjct 1251602 TGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTT 1251543 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 1251542 CACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGTGT 1251483 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1251482 CTTCACGAAGATCTGCAT 1251465 >seq3135 Length=60673567 Score = 114 bits (126), Expect = 1e-20 Identities = 147/198 (74%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 133466 GGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGCCC 133523 |||||||||||| || ||||| || | | | | ||| |||||| ||||| ||||| Sbjct 60530417 GGACTCTTTCTGAATGTTGTAGTC--CGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCCG 60530360 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582 || | | || || |||||||||| ||||||||||||||||| ||| ||| || || Sbjct 60530359 GCAAATACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGAT-TTTGGCTTT 60530301 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| |||||| ||||||| || || | ||||| ||| ||||| | || || Sbjct 60530300 GACATTCTCACTGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCCTTAGGGT 60530241 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 60530240 CTTCACGAATATCTGCAT 60530223 >seq3063 Length=7952490 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| | || || |||||||| || ||| | || || || ||||| || Sbjct 5877699 GTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCATCCATCTTCCAGTTGCTTACCA 5877640 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 | | || |||| ||||| || ||||| || |||||||| || |||||| ||| Sbjct 5877639 ACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGGATCTTGGCCTTT 5877580 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | |||| || |||||| || | || ||||| ||| | || || || ||| Sbjct 5877579 ACATTTTCTATAGTGTTGGAGGGCTCAACCTGGAGGGTGATGGTCCTCCCCGTAAGGGTT 5877520 Query 133644 TTTACGAAAATCTGCAT 133660 ||||||||||||||||| Sbjct 5877519 TTTACGAAAATCTGCAT 5877503 >seq3143 Length=88675666 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 120679 ATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATG 120738 || ||||||||| || || |||||||||| || |||| || |||| | |||| || Sbjct 4807134 ATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAGGAGGCCTCTCTTCTTCAGCCAGAAGATA 4807075 Query 120739 GCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCA 120790 || |||||| ||||| |||||||||||||||||| || ||||| |||| Sbjct 4807074 GCCGCAAAGGACCCCGAGAAGAACACGCCCTCCACGGCCGCGAAGGCCACCA 4807023 >seq3126 Length=40167016 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/203 (69%), Gaps = 7/203 (3%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGC 133517 |||| |||||||||||| || || ||||| || | || | ||||| ||||| Sbjct 36688784 TGTAGGGTGGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTCCAACCATCCTCCAGCTGT 36688843 Query 133518 TTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTT 133577 |||| ||| | || || | |||||| || || ||||||| |||||||| ||| || Sbjct 36688844 TTGCTGGCGAATATCAGGCACTGCTGTTCAGGTGGGATGCTCTCCTTGTCTTGGATTTTG 36688903 Query 133578 TGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTC 133637 |||| || ||||| ||||||| || |||| | || ||| || || ||| Sbjct 36688904 GTTTTGACTTG-------GTGTCACTGGGCTCGACCTCGAGGATGGTGGTCTTACCCGTC 36688956 Query 133638 AGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| |||||||| Sbjct 36688957 AGGGTCTTCACGAAGATCTGCAT 36688979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483401801562560