Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq2965 147 2e-30
seq3082 143 3e-29
seq3135 114 1e-20
seq3063 89.7 5e-13
seq3143 86.0 6e-12
seq3126 84.2 2e-11
>seq2965
Length=1497097
Score = 147 bits (162), Expect = 2e-30
Identities = 152/199 (76%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| ||| | ||| | ||| || |||||||||||
Sbjct 1204083 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCC 1204024
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || |||| ||||||||| || |||||||| |||||||| |||||| |||
Sbjct 1204023 AGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTT 1203964
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | ||||| ||||| ||||||| || |||| ||||| ||| ||||| || || ||
Sbjct 1203963 GACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTGCCAGTGAGGGT 1203904
Query 133643 TTTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 1203903 CTTCACGAAGATCTGCATG 1203885
Score = 145 bits (160), Expect = 7e-30
Identities = 151/198 (76%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| || | ||| | ||| || |||||||||||
Sbjct 1203855 GGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCC 1203796
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || |||| ||||||||| || |||||||| |||||||| |||||| |||
Sbjct 1203795 AGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTT 1203736
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | ||||| ||||| ||||||| || |||| ||||| ||| ||||| || || ||
Sbjct 1203735 GACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTGCCAGTGAGGGT 1203676
Query 133643 TTTTACGAAAATCTGCAT 133660
|||||||| ||||||||
Sbjct 1203675 CTTTACGAAGATCTGCAT 1203658
>seq3082
Length=10725151
Score = 143 bits (158), Expect = 3e-29
Identities = 152/198 (77%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|||||||||||||| || ||||| || | ||| ||| | || || |||||||||||
Sbjct 1251205 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCA-TCTTCCAGCTGCTTGCC 1251147
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | ||||||| ||||||||| || || ||||||||||| || |||||| |||
Sbjct 1251146 TGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCCTGGATCTTGGCCTT 1251087
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | ||||| |||||| |||||||||| || | ||||| ||| ||||| ||||| ||
Sbjct 1251086 CACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAGGGT 1251027
Query 133643 TTTTACGAAAATCTGCAT 133660
||| ||||| || |||||
Sbjct 1251026 TTTCACGAAGATTTGCAT 1251009
Score = 138 bits (152), Expect = 1e-27
Identities = 151/198 (76%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|||||||||||||| || ||||| || | ||| ||| | || || |||||||||||
Sbjct 1251433 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCA-TCTTCCAGCTGCTTGCC 1251375
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || |||| ||||||||| ||||| |||||||| || || |||||| |||
Sbjct 1251374 TGCAAAGATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTT 1251315
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | ||||| |||||| |||||||||| || | |||| ||| ||||| ||||||||
Sbjct 1251314 CACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGAGT 1251255
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 1251254 CTTCACGAAGATCTGCAT 1251237
Score = 134 bits (148), Expect = 1e-26
Identities = 150/198 (76%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||||||||| || ||||| || | ||| ||| | || || |||||||||||
Sbjct 1251661 GTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCA-TCTTCCAGCTGCTTGCC 1251603
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | ||||||| ||||||||| ||||| |||||||| || || |||||| |||
Sbjct 1251602 TGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTT 1251543
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | ||||| ||||| |||||||||| || | ||||| ||| ||||| ||||| ||
Sbjct 1251542 CACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGTGT 1251483
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 1251482 CTTCACGAAGATCTGCAT 1251465
>seq3135
Length=60673567
Score = 114 bits (126), Expect = 1e-20
Identities = 147/198 (74%), Gaps = 6/198 (3%)
Strand=Plus/Minus
Query 133466 GGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGCCC 133523
|||||||||||| || ||||| || | | | | ||| |||||| ||||| |||||
Sbjct 60530417 GGACTCTTTCTGAATGTTGTAGTC--CGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCCG 60530360
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582
|| | | || || |||||||||| ||||||||||||||||| ||| ||| || ||
Sbjct 60530359 GCAAATACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGAT-TTTGGCTTT 60530301
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | |||| |||||| ||||||| || || | ||||| ||| ||||| | || ||
Sbjct 60530300 GACATTCTCACTGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCCTTAGGGT 60530241
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 60530240 CTTCACGAATATCTGCAT 60530223
>seq3063
Length=7952490
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||| | || || |||||||| || ||| | || || || ||||| ||
Sbjct 5877699 GTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCATCCATCTTCCAGTTGCTTACCA 5877640
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
| | || |||| ||||| || ||||| || |||||||| || |||||| |||
Sbjct 5877639 ACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGGATCTTGGCCTTT 5877580
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | || | |||| || |||||| || | || ||||| ||| | || || || |||
Sbjct 5877579 ACATTTTCTATAGTGTTGGAGGGCTCAACCTGGAGGGTGATGGTCCTCCCCGTAAGGGTT 5877520
Query 133644 TTTACGAAAATCTGCAT 133660
|||||||||||||||||
Sbjct 5877519 TTTACGAAAATCTGCAT 5877503
>seq3143
Length=88675666
Score = 86.0 bits (94), Expect = 6e-12
Identities = 86/112 (77%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 120679 ATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATG 120738
|| ||||||||| || || |||||||||| || |||| || |||| | |||| ||
Sbjct 4807134 ATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAGGAGGCCTCTCTTCTTCAGCCAGAAGATA 4807075
Query 120739 GCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCA 120790
|| |||||| ||||| |||||||||||||||||| || ||||| ||||
Sbjct 4807074 GCCGCAAAGGACCCCGAGAAGAACACGCCCTCCACGGCCGCGAAGGCCACCA 4807023
>seq3126
Length=40167016
Score = 84.2 bits (92), Expect = 2e-11
Identities = 140/203 (69%), Gaps = 7/203 (3%)
Strand=Plus/Plus
Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGC 133517
|||| |||||||||||| || || ||||| || | || | ||||| |||||
Sbjct 36688784 TGTAGGGTGGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTCCAACCATCCTCCAGCTGT 36688843
Query 133518 TTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTT 133577
|||| ||| | || || | |||||| || || ||||||| |||||||| ||| ||
Sbjct 36688844 TTGCTGGCGAATATCAGGCACTGCTGTTCAGGTGGGATGCTCTCCTTGTCTTGGATTTTG 36688903
Query 133578 TGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTC 133637
|||| || ||||| ||||||| || |||| | || ||| || || |||
Sbjct 36688904 GTTTTGACTTG-------GTGTCACTGGGCTCGACCTCGAGGATGGTGGTCTTACCCGTC 36688956
Query 133638 AGAGTTTTTACGAAAATCTGCAT 133660
|| || || ||||| ||||||||
Sbjct 36688957 AGGGTCTTCACGAAGATCTGCAT 36688979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483401801562560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |