Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq3122 223 4e-53
seq3108 152 6e-32
>seq3122
Length=33939536
Score = 223 bits (246), Expect = 4e-53
Identities = 658/1006 (65%), Gaps = 19/1006 (2%)
Strand=Plus/Minus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| ||||| || |||| ||| || |||||||||| || || | ||| |||
Sbjct 27423675 CCAGGGCTTTATGCCGCAGATGCTCATCCAGACACTGGATGGCAAAGAGGTCGACGTCCA 27423616
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
|| |||||||| || || | ||| || || || ||||| | | ||||| |
Sbjct 27423615 TGTCAAACTTGTTGGCAAAAAAGTGGTGT---TTGCGCAGCATCCACGTCAAGTCCCCAG 27423559
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
||| || | ||||||| || || || || || ||||| ||||| | || || |
Sbjct 27423558 CTCCAAAAATGCACACGCTGCGTACATGGACCCCATCACACGGGGGATAGGGCGCGCCCT 27423499
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
|| || ||||| || ||| |||||||| |||||||| | | ||||||||||| |
Sbjct 27423498 TGTTCAGGTCCCCTTCAAGGTACTGCCACTTGACGAACCTGGCCACGGCCTGCATGTCAG 27423439
Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
| ||||||||||| |||| || || || | | || | || || | |
Sbjct 27423438 ATAGGTCGTACTTGTGGTTCAGGGGCAGGGAGCCTGGGGCCTCAGGGATCCTTTGGATCG 27423379
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418
| ||||| || | || || || || ||||| || | | |||||||||||||| || ||
Sbjct 27423378 TGGCCCAGAGATACTCATCAGGGCTGTACGTGTCTTGTGCCCACTCCATGAACTTCCGGA 27423319
Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478
|| || | || | || || || |||| | || | |||||| ||||| |
Sbjct 27423318 TGTCTTCATTTTCCAGCACATAGCCCACATACTCCCTGCTGACCACAAAGTAGGCGCTCC 27423259
Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGT-TGACTACC 162537
| || || | ||| | | ||||| || |||| ||||||| || | | |
Sbjct 27423258 CTGAGAAAAGAGGTGTTTTGAGCGGAGGCTGCGTTTTGGGGGTCCCCGTGTCTGTC-AGC 27423200
Query 162538 ATTCCCTCTACGACCAC---GTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA-GACGG 162593
| || || || || | ||| ||||||| |||| | ||| ||| | | |
Sbjct 27423199 TTCCCGTCGACAACTGCATAGTGCCTCTTCC---ACCTTTCTG-CTTTGTGGGATGGCAT 27423144
Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653
| || ||||| |||||||| |||| || | ||| |||| | || || || ||
Sbjct 27423143 CTTCTCCGTCTCCAGACTGTTTTCACCCATGAACGACTTGAGCTTCCTGACAATTTCCAG 27423084
Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713
||||| |||| |||||| || | || || || || || | || ||||| | ||||
Sbjct 27423083 GTTGGTTTTAATGGGAAAATCCATCCCACAAAGGTTGATCAGGTACTTCCAGTCCGCGCT 27423024
Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773
| || ||| || |||| | |||||||| || ||||| || || |||||||| |||||
Sbjct 27423023 CATTCTGTAGAGGTCCTTCATGCAGTTCAGGTCAGCCTGCACCCGGCTCCACGATGCGTA 27422964
Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833
|| |||||||||| | | |||| ||||||||||| |||||| || | || || |
Sbjct 27422963 GACCACGCTCTCCAGCTGACTGGCCACAAAGACATTCCTGAAACAGGACGCGATGCCTTT 27422904
Query 162834 CACGGCCAGTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGATT 162890
||| || | ||| | |||| | ||| || || || || | ||| || | |||
Sbjct 27422903 CACCGCGGCTATGAA---GGAGTCCTTTGATTTTCTGTCCACATGGATGCAATAGAAATT 27422847
Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950
|||||| || |||||||| || | || || | |||||| || || || || |||||
Sbjct 27422846 CTGAGGCATATAAATGGCCCTTAGAAGCCTGTCAAGCATCTCGATTTTGTGATGGACCAC 27422787
Query 162951 GATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTT 163010
|| || ||||| || ||||| | |||||||| || || | | || | ||| ||
Sbjct 27422786 TATGGAGTACGCAATCGGGAAGCCTGCCTCCTCTTTGCTAAGGGGTTCCGTGATGTATTT 27422727
Query 163011 GCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056
||| | | | || | | |||||| |||||||| ||||||
Sbjct 27422726 GCGCATCTTGATGAAGGAGGTGCAGTCCCTGGTCATGTTGACGTAG 27422681
>seq3108
Length=23989115
Score = 152 bits (168), Expect = 6e-32
Identities = 228/321 (71%), Gaps = 2/321 (1%)
Strand=Plus/Minus
Query 171773 TAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAACAC 171832
||||| || || ||||| | || || || || || | ||||| ||||| || | ||||
Sbjct 13844854 TAGAGGGTAAGGCAGGTTGTTCCTGAGATCTTCCCAGCGCCAAAGGTATTGAAGAGACAC 13844795
Query 171833 ATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTG-AG 171891
|| |||| ||||| ||||||| || | ||||| || || | | || || ||| |
Sbjct 13844794 ATGTAACACCCTTCATCCTCCAGTGTTGCATTCCAGAAGGTGATGGCTGACTT-CTGCAA 13844736
Query 171892 TCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGATT 171951
||| | | || ||||||| || ||| | || ||||||||||| ||||| || || ||
Sbjct 13844735 TCCCACCTCGGTGATGTTCATCCTATCCATATAGGGAGGCTGGACCACAACCCCATGTTT 13844676
Query 171952 CTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTAT 172011
|| ||| | |||||||||||||| ||||| || |||| | || ||||| || || ||
Sbjct 13844675 CTTACTGTAGGTGGCCATGTTTTCTGGGCTTATATCCTTCTTTTTTTGCCATGTCACAAT 13844616
Query 172012 TAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATTC 172071
||| ||||| | | ||| | ||| ||||| || || ||||||||||||| |
Sbjct 13844615 TAAGGCTTCTAAGGAAGATTGCAAAGAACATCTCAAGGATGCAGGTGTGTTCAGCGGCTT 13844556
Query 172072 CCTTTCGTCTTGCGTTACCAC 172092
||||| || || || |||||
Sbjct 13844555 GCTTTCATCCTGGGTCACCAC 13844535
Score = 147 bits (162), Expect = 3e-30
Identities = 160/212 (75%), Gaps = 3/212 (1%)
Strand=Plus/Minus
Query 171530 CCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTAGGATCTTTT 171589
|||||||| | ||| | ||| |||||||||| | || || ||||| || | ||||||
Sbjct 13846616 CCCAAGTGCAGGACCTGGCAGATCACCTCCT---TCCCAACCTGACTCTTGGCATCTTTG 13846560
Query 171590 ACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACGGTTTTAGTACTA 171649
|| || ||||||||||| |||||||| || || ||| |||| | ||| | | ||| ||
Sbjct 13846559 ACGTGGAGAATGCTAGTGACAGATGTGGTGCCATTAGGATGCAAAACACTCTCAGTGGTA 13846500
Query 171650 TTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTAGCAGTAGCA 171709
|| || || || || || ||||| ||||| | || ||||| || || | ||||| |||
Sbjct 13846499 TTCTCAATCCCTGACCCAGCAACCTTCCAGGAGATCACAGGGGCCGGGCGGGCAGTGGCA 13846440
Query 171710 GAGCAAGTTATGTTTAATCCATCTTCGAAGAA 171741
|||||||| ||||||| ||||||||||||
Sbjct 13846439 GAGCAAGTGATGTTTAGCTGATCTTCGAAGAA 13846408
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578409267622400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |