Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq3122 223 4e-53 seq3108 152 6e-32 >seq3122 Length=33939536 Score = 223 bits (246), Expect = 4e-53 Identities = 658/1006 (65%), Gaps = 19/1006 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| || |||| ||| || |||||||||| || || | ||| ||| Sbjct 27423675 CCAGGGCTTTATGCCGCAGATGCTCATCCAGACACTGGATGGCAAAGAGGTCGACGTCCA 27423616 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || |||||||| || || | ||| || || || ||||| | | ||||| | Sbjct 27423615 TGTCAAACTTGTTGGCAAAAAAGTGGTGT---TTGCGCAGCATCCACGTCAAGTCCCCAG 27423559 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| || | ||||||| || || || || || ||||| ||||| | || || | Sbjct 27423558 CTCCAAAAATGCACACGCTGCGTACATGGACCCCATCACACGGGGGATAGGGCGCGCCCT 27423499 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 || || ||||| || ||| |||||||| |||||||| | | ||||||||||| | Sbjct 27423498 TGTTCAGGTCCCCTTCAAGGTACTGCCACTTGACGAACCTGGCCACGGCCTGCATGTCAG 27423439 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | ||||||||||| |||| || || || | | || | || || | | Sbjct 27423438 ATAGGTCGTACTTGTGGTTCAGGGGCAGGGAGCCTGGGGCCTCAGGGATCCTTTGGATCG 27423379 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || || || || ||||| || | | |||||||||||||| || || Sbjct 27423378 TGGCCCAGAGATACTCATCAGGGCTGTACGTGTCTTGTGCCCACTCCATGAACTTCCGGA 27423319 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 || || | || | || || || |||| | || | |||||| ||||| | Sbjct 27423318 TGTCTTCATTTTCCAGCACATAGCCCACATACTCCCTGCTGACCACAAAGTAGGCGCTCC 27423259 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGT-TGACTACC 162537 | || || | ||| | | ||||| || |||| ||||||| || | | | Sbjct 27423258 CTGAGAAAAGAGGTGTTTTGAGCGGAGGCTGCGTTTTGGGGGTCCCCGTGTCTGTC-AGC 27423200 Query 162538 ATTCCCTCTACGACCAC---GTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA-GACGG 162593 | || || || || | ||| ||||||| |||| | ||| ||| | | | Sbjct 27423199 TTCCCGTCGACAACTGCATAGTGCCTCTTCC---ACCTTTCTG-CTTTGTGGGATGGCAT 27423144 Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653 | || ||||| |||||||| |||| || | ||| |||| | || || || || Sbjct 27423143 CTTCTCCGTCTCCAGACTGTTTTCACCCATGAACGACTTGAGCTTCCTGACAATTTCCAG 27423084 Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713 ||||| |||| |||||| || | || || || || || | || ||||| | |||| Sbjct 27423083 GTTGGTTTTAATGGGAAAATCCATCCCACAAAGGTTGATCAGGTACTTCCAGTCCGCGCT 27423024 Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 | || ||| || |||| | |||||||| || ||||| || || |||||||| ||||| Sbjct 27423023 CATTCTGTAGAGGTCCTTCATGCAGTTCAGGTCAGCCTGCACCCGGCTCCACGATGCGTA 27422964 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 || |||||||||| | | |||| ||||||||||| |||||| || | || || | Sbjct 27422963 GACCACGCTCTCCAGCTGACTGGCCACAAAGACATTCCTGAAACAGGACGCGATGCCTTT 27422904 Query 162834 CACGGCCAGTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGATT 162890 ||| || | ||| | |||| | ||| || || || || | ||| || | ||| Sbjct 27422903 CACCGCGGCTATGAA---GGAGTCCTTTGATTTTCTGTCCACATGGATGCAATAGAAATT 27422847 Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950 |||||| || |||||||| || | || || | |||||| || || || || ||||| Sbjct 27422846 CTGAGGCATATAAATGGCCCTTAGAAGCCTGTCAAGCATCTCGATTTTGTGATGGACCAC 27422787 Query 162951 GATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTT 163010 || || ||||| || ||||| | |||||||| || || | | || | ||| || Sbjct 27422786 TATGGAGTACGCAATCGGGAAGCCTGCCTCCTCTTTGCTAAGGGGTTCCGTGATGTATTT 27422727 Query 163011 GCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 ||| | | | || | | |||||| |||||||| |||||| Sbjct 27422726 GCGCATCTTGATGAAGGAGGTGCAGTCCCTGGTCATGTTGACGTAG 27422681 >seq3108 Length=23989115 Score = 152 bits (168), Expect = 6e-32 Identities = 228/321 (71%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 171773 TAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAACAC 171832 ||||| || || ||||| | || || || || || | ||||| ||||| || | |||| Sbjct 13844854 TAGAGGGTAAGGCAGGTTGTTCCTGAGATCTTCCCAGCGCCAAAGGTATTGAAGAGACAC 13844795 Query 171833 ATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTG-AG 171891 || |||| ||||| ||||||| || | ||||| || || | | || || ||| | Sbjct 13844794 ATGTAACACCCTTCATCCTCCAGTGTTGCATTCCAGAAGGTGATGGCTGACTT-CTGCAA 13844736 Query 171892 TCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGATT 171951 ||| | | || ||||||| || ||| | || ||||||||||| ||||| || || || Sbjct 13844735 TCCCACCTCGGTGATGTTCATCCTATCCATATAGGGAGGCTGGACCACAACCCCATGTTT 13844676 Query 171952 CTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTAT 172011 || ||| | |||||||||||||| ||||| || |||| | || ||||| || || || Sbjct 13844675 CTTACTGTAGGTGGCCATGTTTTCTGGGCTTATATCCTTCTTTTTTTGCCATGTCACAAT 13844616 Query 172012 TAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATTC 172071 ||| ||||| | | ||| | ||| ||||| || || ||||||||||||| | Sbjct 13844615 TAAGGCTTCTAAGGAAGATTGCAAAGAACATCTCAAGGATGCAGGTGTGTTCAGCGGCTT 13844556 Query 172072 CCTTTCGTCTTGCGTTACCAC 172092 ||||| || || || ||||| Sbjct 13844555 GCTTTCATCCTGGGTCACCAC 13844535 Score = 147 bits (162), Expect = 3e-30 Identities = 160/212 (75%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 171530 CCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTAGGATCTTTT 171589 |||||||| | ||| | ||| |||||||||| | || || ||||| || | |||||| Sbjct 13846616 CCCAAGTGCAGGACCTGGCAGATCACCTCCT---TCCCAACCTGACTCTTGGCATCTTTG 13846560 Query 171590 ACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACGGTTTTAGTACTA 171649 || || ||||||||||| |||||||| || || ||| |||| | ||| | | ||| || Sbjct 13846559 ACGTGGAGAATGCTAGTGACAGATGTGGTGCCATTAGGATGCAAAACACTCTCAGTGGTA 13846500 Query 171650 TTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTAGCAGTAGCA 171709 || || || || || || ||||| ||||| | || ||||| || || | ||||| ||| Sbjct 13846499 TTCTCAATCCCTGACCCAGCAACCTTCCAGGAGATCACAGGGGCCGGGCGGGCAGTGGCA 13846440 Query 171710 GAGCAAGTTATGTTTAATCCATCTTCGAAGAA 171741 |||||||| ||||||| |||||||||||| Sbjct 13846439 GAGCAAGTGATGTTTAGCTGATCTTCGAAGAA 13846408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578409267622400