Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq3061 105 2e-17 seq3082 102 2e-16 seq3063 102 2e-16 seq3105 96.9 8e-15 seq3080 84.2 5e-11 >seq3061 Length=7642621 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || |||||||| || ||||| | | | ||| ||| ||||| || ||| Sbjct 2174437 AAAACCCTTACAGGAAAGACCATCACCCTCAAGGCTGAACCTTCAGACACTGTAGAAAAT 2174496 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || ||||| || ||||| Sbjct 2174497 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAACAAAGGCTGATCTTT 2174556 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||||||||||| | |||||| | ||||||||| | || || ||| | Sbjct 2174557 GCTGGTAAC----TGGAAGATGGATGCACTTTGTCTGATTACAACATTCAAAAGGAGACC 2174612 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 |||||||| ||||| ||||| Sbjct 2174613 ACTCTTCATCTTGTGCTGAGA 2174633 >seq3082 Length=10725151 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||||||||| |||||| | || Sbjct 1251480 AAGACACTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATTGAGAAT 1251539 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||| ||| || ||| || || || ||||| Sbjct 1251540 GTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAGCAGAGGCTCATCTTT 1251599 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | || |||||| |||||||||||||| Sbjct 1251600 GCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCT 1251659 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 1251660 ACTCTGCACCTGGT 1251673 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| |||| ||||| ||||| | || Sbjct 1251252 AAGACTCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGCGACACCATTGAGAAT 1251311 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||| ||| || ||| || || |||||||| Sbjct 1251312 GTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAGCAGAGGCTTATCTTT 1251371 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | || |||||| ||||||||||||| Sbjct 1251372 GCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCC 1251431 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 1251432 ACTCTGCACCTGGT 1251445 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| ||||| ||||| ||||| | || Sbjct 1251024 AAAACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCCAGCGACACCATTGAGAAT 1251083 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || ||||| Sbjct 1251084 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCACCTGACCAGCAGAGGCTCATCTTT 1251143 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | || |||||| ||||||||||||| Sbjct 1251144 GCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCC 1251203 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 1251204 ACTCTGCACCTGGT 1251217 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| ||||| ||||||||||||| || ||||||| | ||| | ||||||||| Sbjct 1251445 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCC 1251386 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| || || |||||||||| Sbjct 1251385 AGCTGCTTGCCTGCAAAGATAAGCC 1251361 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| ||||||||||||||||||| || ||||||| | ||| | ||||||||| Sbjct 1251673 ACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCC 1251614 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| || || ||||| |||| Sbjct 1251613 AGCTGCTTGCCTGCAAAGATGAGCC 1251589 >seq3063 Length=7952490 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| ||||| || ||||||||| || || ||||| || ||||| Sbjct 5877578 GTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGATCAGCAAAGGCTGATCTTT 5877637 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 | || ||||| ||||||||||| | |||||| | ||||||||| | || | ||||| Sbjct 5877638 GTTGGTAAGCAACTGGAAGATGGATGCACTTTGTCTGATTACAACATTCAAAGGGAGTCC 5877697 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || ||||| |||||||| || Sbjct 5877698 ACTCTCCATCTTGTGTTGAGACTCCG 5877723 >seq3105 Length=21505965 Score = 96.9 bits (106), Expect = 8e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || ||||| || ||||| Sbjct 7417487 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGGCTGATCTTT 7417428 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || | | || ||||||||||| | |||||| | ||||||||| | || || ||||| Sbjct 7417427 GCTGCTACACAACTGGAAGATGGACGTACTTTGTCTGATTACAACATTCAAAAGGAGTCC 7417368 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| |||||||| || Sbjct 7417367 ACTCTTCATCTTGTGTTGAGACTCCG 7417342 >seq3080 Length=10554711 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || |||| |||| | || || |||| || ||||| Sbjct 4932437 GTAAAGGCCAAGATCCAGGATAAGGAAGCAATTCTTCCTGATCAGCAAAAGCTGATCTTT 4932378 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 | || ||||| ||||||||||| | |||| | ||||||||| | || || ||||| Sbjct 4932377 ACAGGTAAGCAACTGGAAGATGGACATATTTTGTCTGATTACAACATTCAAAAGGAGTCG 4932318 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| | ||||| || Sbjct 4932317 ACTCTTCATCTTGTGCTAAGACTCCG 4932292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181773193303624