Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq3061 105 2e-17
seq3082 102 2e-16
seq3063 102 2e-16
seq3105 96.9 8e-15
seq3080 84.2 5e-11
>seq3061
Length=7642621
Score = 105 bits (116), Expect = 2e-17
Identities = 144/201 (72%), Gaps = 4/201 (2%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || |||||||| || ||||| | | | ||| ||| ||||| || |||
Sbjct 2174437 AAAACCCTTACAGGAAAGACCATCACCCTCAAGGCTGAACCTTCAGACACTGTAGAAAAT 2174496
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || || || ||||||||| || || ||||| || |||||
Sbjct 2174497 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAACAAAGGCTGATCTTT 2174556
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || || ||||||||||| | |||||| | ||||||||| | || || ||| |
Sbjct 2174557 GCTGGTAAC----TGGAAGATGGATGCACTTTGTCTGATTACAACATTCAAAAGGAGACC 2174612
Query 206365 ACTCTTCACCTTGTTTTGAGA 206385
|||||||| ||||| |||||
Sbjct 2174613 ACTCTTCATCTTGTGCTGAGA 2174633
>seq3082
Length=10725151
Score = 102 bits (112), Expect = 2e-16
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || || ||||| |||||||||| |||||| | ||
Sbjct 1251480 AAGACACTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATTGAGAAT 1251539
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || |||||||| ||| || ||| || || || |||||
Sbjct 1251540 GTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAGCAGAGGCTCATCTTT 1251599
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || |||||| |||||||||| | ||| | | || |||||| ||||||||||||||
Sbjct 1251600 GCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCT 1251659
Query 206365 ACTCTTCACCTTGT 206378
||||| ||||| ||
Sbjct 1251660 ACTCTGCACCTGGT 1251673
Score = 98.7 bits (108), Expect = 2e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || || |||||| |||| ||||| ||||| | ||
Sbjct 1251252 AAGACTCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGCGACACCATTGAGAAT 1251311
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || |||||||| ||| || ||| || || ||||||||
Sbjct 1251312 GTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAGCAGAGGCTTATCTTT 1251371
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || |||||| |||||||||| | ||| | | || |||||| |||||||||||||
Sbjct 1251372 GCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCC 1251431
Query 206365 ACTCTTCACCTTGT 206378
||||| ||||| ||
Sbjct 1251432 ACTCTGCACCTGGT 1251445
Score = 93.3 bits (102), Expect = 1e-13
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || || || || || ||||| ||||| ||||| ||||| | ||
Sbjct 1251024 AAAACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCCAGCGACACCATTGAGAAT 1251083
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || ||||| ||| || ||| || || || |||||
Sbjct 1251084 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCACCTGACCAGCAGAGGCTCATCTTT 1251143
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || |||||| |||||||||| | ||| | | || |||||| |||||||||||||
Sbjct 1251144 GCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCC 1251203
Query 206365 ACTCTTCACCTTGT 206378
||||| ||||| ||
Sbjct 1251204 ACTCTGCACCTGGT 1251217
Score = 86.0 bits (94), Expect = 1e-11
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823
|| ||||| ||||| ||||||||||||| || ||||||| | ||| | |||||||||
Sbjct 1251445 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCC 1251386
Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848
|||||||| || || ||||||||||
Sbjct 1251385 AGCTGCTTGCCTGCAAAGATAAGCC 1251361
Score = 86.0 bits (94), Expect = 1e-11
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823
|| ||||| ||||||||||||||||||| || ||||||| | ||| | |||||||||
Sbjct 1251673 ACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCC 1251614
Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848
|||||||| || || ||||| ||||
Sbjct 1251613 AGCTGCTTGCCTGCAAAGATGAGCC 1251589
>seq3063
Length=7952490
Score = 102 bits (112), Expect = 2e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| ||||| || ||||||||| || || ||||| || |||||
Sbjct 5877578 GTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGATCAGCAAAGGCTGATCTTT 5877637
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
| || ||||| ||||||||||| | |||||| | ||||||||| | || | |||||
Sbjct 5877638 GTTGGTAAGCAACTGGAAGATGGATGCACTTTGTCTGATTACAACATTCAAAGGGAGTCC 5877697
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
||||| || ||||| |||||||| ||
Sbjct 5877698 ACTCTCCATCTTGTGTTGAGACTCCG 5877723
>seq3105
Length=21505965
Score = 96.9 bits (106), Expect = 8e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || || || ||||||||| || || ||||| || |||||
Sbjct 7417487 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGGCTGATCTTT 7417428
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| | | || ||||||||||| | |||||| | ||||||||| | || || |||||
Sbjct 7417427 GCTGCTACACAACTGGAAGATGGACGTACTTTGTCTGATTACAACATTCAAAAGGAGTCC 7417368
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||||| ||||| |||||||| ||
Sbjct 7417367 ACTCTTCATCTTGTGTTGAGACTCCG 7417342
>seq3080
Length=10554711
Score = 84.2 bits (92), Expect = 5e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || || || |||| |||| | || || |||| || |||||
Sbjct 4932437 GTAAAGGCCAAGATCCAGGATAAGGAAGCAATTCTTCCTGATCAGCAAAAGCTGATCTTT 4932378
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
| || ||||| ||||||||||| | |||| | ||||||||| | || || |||||
Sbjct 4932377 ACAGGTAAGCAACTGGAAGATGGACATATTTTGTCTGATTACAACATTCAAAAGGAGTCG 4932318
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|||||||| ||||| | ||||| ||
Sbjct 4932317 ACTCTTCATCTTGTGCTAAGACTCCG 4932292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181773193303624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |