Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3082 93.3 4e-14 seq3040 86.0 6e-12 >seq3082 Length=10725151 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| | || || |||||| ||||| || || | | Sbjct 1251430 GACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCA 1251371 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| |||||||||||||| || || |||| Sbjct 1251370 AAGATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACA 1251311 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | |||||||| || | || | || || ||||||||||| || Sbjct 1251310 TTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTC 1251251 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 1251250 ACGAAGATCTGCAT 1251237 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| | || || |||||| ||||| || || | | Sbjct 1251658 GACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCA 1251599 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| |||||||||||||| || || |||| Sbjct 1251598 AAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACA 1251539 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||||||||| | || | || || |||||||| || || Sbjct 1251538 TTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTC 1251479 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 1251478 ACGAAGATCTGCAT 1251465 >seq3040 Length=4637412 Score = 86.0 bits (94), Expect = 6e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 147511 ACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTC 147570 || ||||| | |||||||||||||||||| || ||||| || ||||| ||||| || Sbjct 3943303 ACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGGTTGCTCTTT 3943244 Query 147571 CGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 ||||| || | |||||| ||||||||||||| Sbjct 3943243 CGATTACAGGAATCTTTGTAGAGCATGTACGG 3943212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476592469179840