Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq3082 93.3 4e-14
seq3040 86.0 6e-12
>seq3082
Length=10725151
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|||||||| || ||||||||||| | || || |||||| ||||| || || | |
Sbjct 1251430 GACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCA 1251371
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || | ||| || || ||||| |||||||||||||| || || ||||
Sbjct 1251370 AAGATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACA 1251311
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || ||| | |||||||| || | || | || || ||||||||||| ||
Sbjct 1251310 TTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTC 1251251
Query 132110 ATGAAAATCTGCAT 132123
| ||| ||||||||
Sbjct 1251250 ACGAAGATCTGCAT 1251237
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|||||||| || ||||||||||| | || || |||||| ||||| || || | |
Sbjct 1251658 GACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCA 1251599
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || | ||| || || ||||| |||||||||||||| || || ||||
Sbjct 1251598 AAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACA 1251539
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || || | ||||||||||| | || | || || |||||||| || ||
Sbjct 1251538 TTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTC 1251479
Query 132110 ATGAAAATCTGCAT 132123
| ||| ||||||||
Sbjct 1251478 ACGAAGATCTGCAT 1251465
>seq3040
Length=4637412
Score = 86.0 bits (94), Expect = 6e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 147511 ACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTC 147570
|| ||||| | |||||||||||||||||| || ||||| || ||||| ||||| ||
Sbjct 3943303 ACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGGTTGCTCTTT 3943244
Query 147571 CGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602
||||| || | |||||| |||||||||||||
Sbjct 3943243 CGATTACAGGAATCTTTGTAGAGCATGTACGG 3943212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476592469179840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |