Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq3108 176 5e-39
seq3129 168 8e-37
seq3131 141 1e-28
seq3136 129 7e-25
>seq3108
Length=23989115
Score = 176 bits (194), Expect = 5e-39
Identities = 232/322 (72%), Gaps = 0/322 (0%)
Strand=Plus/Plus
Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131
||||||||||||||||| || || ||||||||| || || ||| ||| ||| || ||
Sbjct 13844535 GTGGTGACCCAGGATGAAAGCAAGCCGCTGAACACACCTGCATCCTTGAGATGTTCTTTG 13844594
Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191
|| |||| || | | ||||| || ||||| |||| ||| | | |||||
Sbjct 13844595 CAATCTTCCTTAGAAGCCTTAATTGTGACATGGCAAAAAAAGAAGGATATAAGCCCAGAA 13844654
Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251
|||||| || | || || | || ||||| ||||||||||| | |||| ||| | |
Sbjct 13844655 AACATGGCCACCTACAGTAAGAAACATGGGGTTGTGGTCCAGCCTCCCTATATGGATAGG 13844714
Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311
|| ||||||||| || | ||| | || || ||| ||||||| || |||||| | || |
Sbjct 13844715 ATGAACATCACCGAGGTGGGATTGCAGAAGTCAGCCATCACCTTCTGGAATGCAACACTG 13844774
Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371
||||| || ||||| |||| || ||||| || |||||||| ||||||| ||||| ||
Sbjct 13844775 GAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGCGCTGGGAAGATCTCAGGA 13844834
Query 171372 GTGGCCTGCCTCACCCTCTCCG 171393
||||||| ||||||| ||
Sbjct 13844835 ACAACCTGCCTTACCCTCTACG 13844856
Score = 158 bits (174), Expect = 1e-33
Identities = 201/277 (73%), Gaps = 0/277 (0%)
Strand=Plus/Plus
Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452
|| ||||||| || || || || | || || || || || || || |||||||| ||
Sbjct 13846378 GTACAGCCCATAGTATTCCTTCACCACAATTTCTTCGAAGATCAGCTAAACATCACTTGC 13846437
Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512
||||||| |||||||||| | ||| ||| | |||||| || | ||||||| |||||
Sbjct 13846438 TCTGCCACTGCCCGCCCGGCCCCTGTGATCTCCTGGAAGGTTGCTGGGTCAGGGATTGAG 13846497
Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572
|| | | ||| | ||| ||| ||||||| || || ||||| || || | |||||
Sbjct 13846498 AATACCACTGAGAGTGTTTTGCATCCTAATGGCACCACATCTGTCACTAGCATTCTCCAC 13846557
Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632
|| ||||| ||||||||||| | || |||||||| |||||||| || |||| |||||
Sbjct 13846558 GTCAAAGATGCCAAGAGTCAGGTTGGGAAGGAGGTGATCTGCCAGGTCCTGCACTTGGGA 13846617
Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669
|||| || ||| | ||||||| | ||| ||||
Sbjct 13846618 GATGTGGCTGACTACAAGGAAACTCTGCACAAAGGTA 13846654
>seq3129
Length=43247874
Score = 168 bits (186), Expect = 8e-37
Identities = 134/161 (83%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045
||||| || ||||| || | ||||||||||||||| | ||||||||| |||||||||||
Sbjct 41738265 AGGCCCGTGACGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 41738206
Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105
|| ||||||||||||||||| || | |||||||||||| || || | ||||||| ||
Sbjct 41738205 ACGCCCAGGCCCATGTCCCCAGAGCGCTGGTACAGCTGACAGGACAATTCCCCGTTCACC 41738146
Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146
||||| |||||||| ||| |||| || || |||||||||||
Sbjct 41738145 ACGTAGAACTGGCAGAGGGTGTGACAGGGAGGCAGCGCCAT 41738105
>seq3131
Length=50742376
Score = 141 bits (156), Expect = 1e-28
Identities = 130/167 (78%), Gaps = 12/167 (7%)
Strand=Plus/Plus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|||||||| |||||||||| ||||||||||||||||| |||||||| | | ||||||||
Sbjct 16183885 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTATCTAGTGGAGGTGA 16183944
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| |||| || ||||| | ||| ||||| ||||| ||||||| ||
Sbjct 16183945 TGCCCAAGGCAGAAAATCA------------TGACCCAGACATCAAGGAACATGTAAGCT 16183992
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
| |||||||||||||| |||||||| || || ||||||| || |||
Sbjct 16183993 CCCTGGGGGAAAAGCTGAAGACCCTCAGGCTGCGGCTGCGACGCTGT 16184039
Score = 91.5 bits (100), Expect = 2e-13
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521
|||| ||||| || || || |||||||| |||||||||||||| || || || |||||||
Sbjct 16185999 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 16186058
Query 178522 TAGAAGCTTACATGACAA 178539
||||||| ||||||||||
Sbjct 16186059 TAGAAGCCTACATGACAA 16186076
>seq3136
Length=61004451
Score = 129 bits (142), Expect = 7e-25
Identities = 202/288 (70%), Gaps = 6/288 (2%)
Strand=Plus/Minus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
||||||||||||||| | |||| | | ||||| |||||||| |||| |||||||
Sbjct 47047718 GTACTCTCTGGTGTTCGTCATTGGTGTGGTGGGCAACACCCTGGTGGTCCTGGTCCTCAC 47047659
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
|||| | ||| ||||| | | |||||||| ||||| |||| |||||||||| | ||
Sbjct 47047658 AAAGCAAAAGCGGCTCCGAAACATGACCAGCATCTACCTGCTCAACCTGGCGGTGTCGGA 47047599
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789
|||||| | | ||||| || ||||| ||||| |||| | || | |||| |
Sbjct 47047598 CCTGCTCTTCCTCTTCACGCTTCCCTTCTGGATCCACTAC--ATCCTGAAGAAC----GC 47047545
Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849
|||| | | |||| |||||||||| | | ||||| | | |||| |||||
Sbjct 47047544 CTGGGTCTTTGGCCACGCCATGTGTAAGCTCCTGTATGGCCTCCACTATGTGGGCCTGTA 47047485
Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897
||| || | | || ||||||||| |||| | |||||||| || ||
Sbjct 47047484 CAGTGAGATTTTCTTCATCATCCTGCTGACCATCGACAGGTACCTGGC 47047437
Score = 127 bits (140), Expect = 2e-24
Identities = 508/788 (64%), Gaps = 54/788 (7%)
Strand=Plus/Plus
Query 8662 GTCCTCATAAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCC 8721
||||||| |||||| ||| ||||| |||||||||||||| | |||| ||||| |||||
Sbjct 47104553 GTCCTCACCAAGTACCAGAAGCTCAAAATCATGACCAACATTTACCTGCTCAACTTGGCC 47104612
Query 8722 CTTGGTGACCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT---TCCACTCGGGG 8778
|| ||||||||| | | ||||| || ||||| |||| | ||| | ||||
Sbjct 47104613 ATTTCTGACCTGCTCTTCCTCTTCACGCTTCCCTTCTGGACTTACTATGTTCACT----- 47104667
Query 8779 GGAACTGGTGGGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAAC 8838
||||| ||||||| | |||| |||||||||| | || || || | | ||
Sbjct 47104668 GGAACAAGTGGGTG----TTTGGCCACTTCATGTGTAAGATCATCTCAGGGCTCTACTAC 47104723
Query 8839 GTGGCACTGTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCA 8898
|||| ||| |||||| || | || ||||||||| |||| | ||||||||||| ||
Sbjct 47104724 GTGGGCTTGTTCAGCGAGATCTTCTTCATCATCCTGCTGACCATTGACAGGTATCTGGCC 47104783
Query 8899 GTTGTGTACGCGGTGGCTTACAGGCTG-GTCCGCGT--GGTACCAATAGGCATCCTCGCC 8955
|||| | || ||| | | ||| | | ||| ||| | | || ||| | ||
Sbjct 47104784 ATTGTTCATGCCGTG---TTCGCCCTGCGAACCCGTACTGTAACTTTTGGTATCATAACC 47104840
Query 8956 AGCCTCCTGGCCTGGATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTAT--G 9013
|| || | ||||| ||||||| ||| | | | | || || || || |||||| |
Sbjct 47104841 AGTGTCATCACCTGGGTTCTGGCGGTGCTAGCTGCGCTCCCTGAATTCATGTTTTATGGG 47104900
Query 9014 AATCCAATAATGCCACAGGCAAG--GGGGTCTGCCAAGCCTCCTACACAG---------- 9061
| || | | ||| ||| |||| | || ||| |||
Sbjct 47104901 ACTC----AGGGGCACTTTGAAGTCTTATTCTGTGGTCCTTCTTACCCAGAGAAGAAAGA 47104956
Query 9062 --ACTTTTGGAAGGGGGTTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTT 9119
|| |||||| | | | | | ||| |||| ||| | ||| || ||| |
Sbjct 47104957 ACACCACTGGAAGCGTTTCCAAGCTCTCAGGATGAACATTTTTGGCCTGGCACTCCCTCT 47105016
Query 9120 GCTTATCATGGCCTTCTGCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACA 9178
||| || ||| | |||||||| |||||| ||| ||| || | | | || ||
Sbjct 47105017 GCTCATTATGATCATCTGCTACACAGGAATCATTAAGACCCTGCTGAGATGTCC-CA--- 47105072
Query 9179 GGTCGAGAAACCTGC-ACGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTC 9237
|| | ||| | | | ||| || |||||||| |||| ||||| | | ||||||
Sbjct 47105073 -GTAAAAAAAAGTACAAGGCCATCCGACTCATTTTTGTCATTATGGTGGTCTTTTTTGTG 47105131
Query 9238 TTTTGGATCCCCTACAACGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGG 9297
|| |||| || |||||| | || ||| |||| ||| | | || || |||
Sbjct 47105132 TTCTGGACACCTTACAACCTGCTCCTCCTTTTCTCTGCCTTTGATCTGTCC-TTCCTGG- 47105189
Query 9298 CCAGACTGTGAAGCGCGGCGCA---GGGTGGACATGGCCCTCTTGGTGGCTGAGATGATC 9354
|||||||| |||| ||| | ||||||||||| ||| | ||| |||||
Sbjct 47105190 -ATGACTGTGA---GCGGAGCAAACAGCTGGACATGGCCAAGCACGTGACAGAGGTGATC 47105245
Query 9355 GCCTGCACCCACTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAA 9414
||| ||||||||||||| |||||||| |||||||||| || ||||| || | ||||||
Sbjct 47105246 GCCCACACCCACTGCTGCATCAACCCCATCATCTACGCCTTCGTGGGGGAGAGGTTCCAG 47105305
Query 9415 CAGAACCT 9422
|| ||||
Sbjct 47105306 AAGTACCT 47105313
Score = 122 bits (134), Expect = 1e-22
Identities = 203/294 (69%), Gaps = 6/294 (2%)
Strand=Plus/Minus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
||||||||||||||| | | || | | ||||| ||||||| || | ||||||||
Sbjct 46973209 GTACTCTCTGGTGTTCATCATCGGCGTGGTGGGCAACATCCTGGTGGTCTTGGTCCTCAT 46973150
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
|||| |||| ||||| | | |||||||| ||||| |||| |||||||||| | ||
Sbjct 46973149 GAAGTTCAAGCGGCTCCGAAGCATGACCAGCATCTACCTGCTCAACCTGGCAGTGTCGGA 46973090
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789
|||||| | | ||||| || ||||| | ||| |||| | | | || ||
Sbjct 46973089 CCTGCTCTTCCTCTTCACGCTTCCCTTCTTGATCCACTACATCCTGAAGGACAC------ 46973036
Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849
|||| | | |||| |||||||||| | | || || | | |||||| ||||
Sbjct 46973035 CTGGGTCTTTGGCCACGCCATGTGTAAGCTCCTGTCTGGACTCTACTACGTGGGCTTGTA 46972976
Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903
||| || || | || ||||||||| ||||| | || ||||| || ||| ||||
Sbjct 46972975 CAGTGAGATCTTCTTCATCATCCTGCTGACTATCGATAGGTACCTGGCAATTGT 46972922
Score = 91.5 bits (100), Expect = 2e-13
Identities = 82/103 (80%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382
||||| ||||||| |||| | ||| | ||||||| ||| |||||||| ||||||||
Sbjct 46972493 TGGACCTGGCCCTGCAGGTGACAGAGGTAATCGCCTACACGCACTGCTGTGTCAACCCGA 46972434
Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCTTCA 9425
||||||| | |||||||||||| ||||||| || |||| ||
Sbjct 46972433 TCATCTATGTGTTTGTGGGCGAGAAGTTCCGGAAGTACCTGCA 46972391
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583465068921600
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