Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq3108 176 5e-39 seq3129 168 8e-37 seq3131 141 1e-28 seq3136 129 7e-25 >seq3108 Length=23989115 Score = 176 bits (194), Expect = 5e-39 Identities = 232/322 (72%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| || || ||||||||| || || ||| ||| ||| || || Sbjct 13844535 GTGGTGACCCAGGATGAAAGCAAGCCGCTGAACACACCTGCATCCTTGAGATGTTCTTTG 13844594 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || |||| || | | ||||| || ||||| |||| ||| | | ||||| Sbjct 13844595 CAATCTTCCTTAGAAGCCTTAATTGTGACATGGCAAAAAAAGAAGGATATAAGCCCAGAA 13844654 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| || | || || | || ||||| ||||||||||| | |||| ||| | | Sbjct 13844655 AACATGGCCACCTACAGTAAGAAACATGGGGTTGTGGTCCAGCCTCCCTATATGGATAGG 13844714 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 || ||||||||| || | ||| | || || ||| ||||||| || |||||| | || | Sbjct 13844715 ATGAACATCACCGAGGTGGGATTGCAGAAGTCAGCCATCACCTTCTGGAATGCAACACTG 13844774 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| || ||||| |||| || ||||| || |||||||| ||||||| ||||| || Sbjct 13844775 GAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGCGCTGGGAAGATCTCAGGA 13844834 Query 171372 GTGGCCTGCCTCACCCTCTCCG 171393 ||||||| ||||||| || Sbjct 13844835 ACAACCTGCCTTACCCTCTACG 13844856 Score = 158 bits (174), Expect = 1e-33 Identities = 201/277 (73%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || | || || || || || || || |||||||| || Sbjct 13846378 GTACAGCCCATAGTATTCCTTCACCACAATTTCTTCGAAGATCAGCTAAACATCACTTGC 13846437 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||| |||||||||| | ||| ||| | |||||| || | ||||||| ||||| Sbjct 13846438 TCTGCCACTGCCCGCCCGGCCCCTGTGATCTCCTGGAAGGTTGCTGGGTCAGGGATTGAG 13846497 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || | | ||| | ||| ||| ||||||| || || ||||| || || | ||||| Sbjct 13846498 AATACCACTGAGAGTGTTTTGCATCCTAATGGCACCACATCTGTCACTAGCATTCTCCAC 13846557 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||| ||||||||||| | || |||||||| |||||||| || |||| ||||| Sbjct 13846558 GTCAAAGATGCCAAGAGTCAGGTTGGGAAGGAGGTGATCTGCCAGGTCCTGCACTTGGGA 13846617 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 |||| || ||| | ||||||| | ||| |||| Sbjct 13846618 GATGTGGCTGACTACAAGGAAACTCTGCACAAAGGTA 13846654 >seq3129 Length=43247874 Score = 168 bits (186), Expect = 8e-37 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 ||||| || ||||| || | ||||||||||||||| | ||||||||| ||||||||||| Sbjct 41738265 AGGCCCGTGACGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 41738206 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 || ||||||||||||||||| || | |||||||||||| || || | ||||||| || Sbjct 41738205 ACGCCCAGGCCCATGTCCCCAGAGCGCTGGTACAGCTGACAGGACAATTCCCCGTTCACC 41738146 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||| |||||||| ||| |||| || || ||||||||||| Sbjct 41738145 ACGTAGAACTGGCAGAGGGTGTGACAGGGAGGCAGCGCCAT 41738105 >seq3131 Length=50742376 Score = 141 bits (156), Expect = 1e-28 Identities = 130/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| ||||||||||||||||| |||||||| | | |||||||| Sbjct 16183885 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTATCTAGTGGAGGTGA 16183944 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| |||| || ||||| | ||| ||||| ||||| ||||||| || Sbjct 16183945 TGCCCAAGGCAGAAAATCA------------TGACCCAGACATCAAGGAACATGTAAGCT 16183992 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||||||| |||||||| || || ||||||| || ||| Sbjct 16183993 CCCTGGGGGAAAAGCTGAAGACCCTCAGGCTGCGGCTGCGACGCTGT 16184039 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| |||||||||||||| || || || ||||||| Sbjct 16185999 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 16186058 Query 178522 TAGAAGCTTACATGACAA 178539 ||||||| |||||||||| Sbjct 16186059 TAGAAGCCTACATGACAA 16186076 >seq3136 Length=61004451 Score = 129 bits (142), Expect = 7e-25 Identities = 202/288 (70%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||||||||||||||| | |||| | | ||||| |||||||| |||| ||||||| Sbjct 47047718 GTACTCTCTGGTGTTCGTCATTGGTGTGGTGGGCAACACCCTGGTGGTCCTGGTCCTCAC 47047659 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||| | ||| ||||| | | |||||||| ||||| |||| |||||||||| | || Sbjct 47047658 AAAGCAAAAGCGGCTCCGAAACATGACCAGCATCTACCTGCTCAACCTGGCGGTGTCGGA 47047599 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||||| | | ||||| || ||||| ||||| |||| | || | |||| | Sbjct 47047598 CCTGCTCTTCCTCTTCACGCTTCCCTTCTGGATCCACTAC--ATCCTGAAGAAC----GC 47047545 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 |||| | | |||| |||||||||| | | ||||| | | |||| ||||| Sbjct 47047544 CTGGGTCTTTGGCCACGCCATGTGTAAGCTCCTGTATGGCCTCCACTATGTGGGCCTGTA 47047485 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 ||| || | | || ||||||||| |||| | |||||||| || || Sbjct 47047484 CAGTGAGATTTTCTTCATCATCCTGCTGACCATCGACAGGTACCTGGC 47047437 Score = 127 bits (140), Expect = 2e-24 Identities = 508/788 (64%), Gaps = 54/788 (7%) Strand=Plus/Plus Query 8662 GTCCTCATAAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCC 8721 ||||||| |||||| ||| ||||| |||||||||||||| | |||| ||||| ||||| Sbjct 47104553 GTCCTCACCAAGTACCAGAAGCTCAAAATCATGACCAACATTTACCTGCTCAACTTGGCC 47104612 Query 8722 CTTGGTGACCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT---TCCACTCGGGG 8778 || ||||||||| | | ||||| || ||||| |||| | ||| | |||| Sbjct 47104613 ATTTCTGACCTGCTCTTCCTCTTCACGCTTCCCTTCTGGACTTACTATGTTCACT----- 47104667 Query 8779 GGAACTGGTGGGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAAC 8838 ||||| ||||||| | |||| |||||||||| | || || || | | || Sbjct 47104668 GGAACAAGTGGGTG----TTTGGCCACTTCATGTGTAAGATCATCTCAGGGCTCTACTAC 47104723 Query 8839 GTGGCACTGTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCA 8898 |||| ||| |||||| || | || ||||||||| |||| | ||||||||||| || Sbjct 47104724 GTGGGCTTGTTCAGCGAGATCTTCTTCATCATCCTGCTGACCATTGACAGGTATCTGGCC 47104783 Query 8899 GTTGTGTACGCGGTGGCTTACAGGCTG-GTCCGCGT--GGTACCAATAGGCATCCTCGCC 8955 |||| | || ||| | | ||| | | ||| ||| | | || ||| | || Sbjct 47104784 ATTGTTCATGCCGTG---TTCGCCCTGCGAACCCGTACTGTAACTTTTGGTATCATAACC 47104840 Query 8956 AGCCTCCTGGCCTGGATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTAT--G 9013 || || | ||||| ||||||| ||| | | | | || || || || |||||| | Sbjct 47104841 AGTGTCATCACCTGGGTTCTGGCGGTGCTAGCTGCGCTCCCTGAATTCATGTTTTATGGG 47104900 Query 9014 AATCCAATAATGCCACAGGCAAG--GGGGTCTGCCAAGCCTCCTACACAG---------- 9061 | || | | ||| ||| |||| | || ||| ||| Sbjct 47104901 ACTC----AGGGGCACTTTGAAGTCTTATTCTGTGGTCCTTCTTACCCAGAGAAGAAAGA 47104956 Query 9062 --ACTTTTGGAAGGGGGTTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTT 9119 || |||||| | | | | | ||| |||| ||| | ||| || ||| | Sbjct 47104957 ACACCACTGGAAGCGTTTCCAAGCTCTCAGGATGAACATTTTTGGCCTGGCACTCCCTCT 47105016 Query 9120 GCTTATCATGGCCTTCTGCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACA 9178 ||| || ||| | |||||||| |||||| ||| ||| || | | | || || Sbjct 47105017 GCTCATTATGATCATCTGCTACACAGGAATCATTAAGACCCTGCTGAGATGTCC-CA--- 47105072 Query 9179 GGTCGAGAAACCTGC-ACGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTC 9237 || | ||| | | | ||| || |||||||| |||| ||||| | | |||||| Sbjct 47105073 -GTAAAAAAAAGTACAAGGCCATCCGACTCATTTTTGTCATTATGGTGGTCTTTTTTGTG 47105131 Query 9238 TTTTGGATCCCCTACAACGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTGGG 9297 || |||| || |||||| | || ||| |||| ||| | | || || ||| Sbjct 47105132 TTCTGGACACCTTACAACCTGCTCCTCCTTTTCTCTGCCTTTGATCTGTCC-TTCCTGG- 47105189 Query 9298 CCAGACTGTGAAGCGCGGCGCA---GGGTGGACATGGCCCTCTTGGTGGCTGAGATGATC 9354 |||||||| |||| ||| | ||||||||||| ||| | ||| ||||| Sbjct 47105190 -ATGACTGTGA---GCGGAGCAAACAGCTGGACATGGCCAAGCACGTGACAGAGGTGATC 47105245 Query 9355 GCCTGCACCCACTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCAA 9414 ||| ||||||||||||| |||||||| |||||||||| || ||||| || | |||||| Sbjct 47105246 GCCCACACCCACTGCTGCATCAACCCCATCATCTACGCCTTCGTGGGGGAGAGGTTCCAG 47105305 Query 9415 CAGAACCT 9422 || |||| Sbjct 47105306 AAGTACCT 47105313 Score = 122 bits (134), Expect = 1e-22 Identities = 203/294 (69%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||||||||||||||| | | || | | ||||| ||||||| || | |||||||| Sbjct 46973209 GTACTCTCTGGTGTTCATCATCGGCGTGGTGGGCAACATCCTGGTGGTCTTGGTCCTCAT 46973150 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||| |||| ||||| | | |||||||| ||||| |||| |||||||||| | || Sbjct 46973149 GAAGTTCAAGCGGCTCCGAAGCATGACCAGCATCTACCTGCTCAACCTGGCAGTGTCGGA 46973090 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||||| | | ||||| || ||||| | ||| |||| | | | || || Sbjct 46973089 CCTGCTCTTCCTCTTCACGCTTCCCTTCTTGATCCACTACATCCTGAAGGACAC------ 46973036 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 |||| | | |||| |||||||||| | | || || | | |||||| |||| Sbjct 46973035 CTGGGTCTTTGGCCACGCCATGTGTAAGCTCCTGTCTGGACTCTACTACGTGGGCTTGTA 46972976 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903 ||| || || | || ||||||||| ||||| | || ||||| || ||| |||| Sbjct 46972975 CAGTGAGATCTTCTTCATCATCCTGCTGACTATCGATAGGTACCTGGCAATTGT 46972922 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||||| |||| | ||| | ||||||| ||| |||||||| |||||||| Sbjct 46972493 TGGACCTGGCCCTGCAGGTGACAGAGGTAATCGCCTACACGCACTGCTGTGTCAACCCGA 46972434 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCTTCA 9425 ||||||| | |||||||||||| ||||||| || |||| || Sbjct 46972433 TCATCTATGTGTTTGTGGGCGAGAAGTTCCGGAAGTACCTGCA 46972391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583465068921600