Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_026430.1
Length=125767
Score E
Sequences producing significant alignments: (Bits) Value
seq3082 82.4 6e-11
>seq3082
Length=10725151
Score = 82.4 bits (90), Expect = 6e-11
Identities = 157/229 (69%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 106236 TTTGTCATTTATAAGAGTT--TAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGA 106293
|||||||||| ||| || | ||||||||||| || || ||||| ||||||||||||
Sbjct 1250984 TTTGTCATTT-TAATTGTAGGTCAAAATGCAAATCTTCGTGAAAACCCTGACTGGCAAGA 1251042
Query 106294 CCATTACCGTGGAAACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCG 106353
|||| ||| |||| || ||| |||| | ||| | ||||| || || |
Sbjct 1251043 CCATCACCTTGGAGGTGGAGCCCAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGG 1251102
Query 106354 ACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAG 106413
| || |||||| | || ||| || || ||||| || | ||| ||||| || | ||||
Sbjct 1251103 ATAAGGAAGGCATTCCACCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAG 1251162
Query 106414 ATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACA 106462
|| | ||| | || |||||||| || ||||| || || || ||
Sbjct 1251163 ATGGTCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCCACTCTGCA 1251211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 402314183735552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |