Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq3082 82.4 6e-11 >seq3082 Length=10725151 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 106236 TTTGTCATTTATAAGAGTT--TAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGA 106293 |||||||||| ||| || | ||||||||||| || || ||||| |||||||||||| Sbjct 1250984 TTTGTCATTT-TAATTGTAGGTCAAAATGCAAATCTTCGTGAAAACCCTGACTGGCAAGA 1251042 Query 106294 CCATTACCGTGGAAACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCG 106353 |||| ||| |||| || ||| |||| | ||| | ||||| || || | Sbjct 1251043 CCATCACCTTGGAGGTGGAGCCCAGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGG 1251102 Query 106354 ACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAG 106413 | || |||||| | || ||| || || ||||| || | ||| ||||| || | |||| Sbjct 1251103 ATAAGGAAGGCATTCCACCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAG 1251162 Query 106414 ATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACA 106462 || | ||| | || |||||||| || ||||| || || || || Sbjct 1251163 ATGGTCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCCACTCTGCA 1251211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402314183735552