Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq3082 113 4e-20 seq2965 107 2e-18 seq3063 95.1 1e-14 seq3105 91.5 1e-13 seq2997 89.7 5e-13 seq3061 87.8 2e-12 seq3135 86.0 6e-12 >seq3082 Length=10725151 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 1251428 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAA 1251369 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||||| || || || ||| |||||| ||||| | | Sbjct 1251368 GATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACATT 1251309 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||||| ||||| || || || |||| ||| ||||| Sbjct 1251308 CTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCAC 1251249 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1251248 GAAGATCTGCAT 1251237 Score = 111 bits (122), Expect = 1e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 1251200 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAA 1251141 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || ||||| ||| |||||| ||||| | | Sbjct 1251140 GATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 1251081 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||||| ||||| || || || |||| |||||||| Sbjct 1251080 CTCAATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCAC 1251021 Query 35725 AAATATCTGCATTCTG 35740 || || |||||| || Sbjct 1251020 GAAGATTTGCATTTTG 1251005 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 1251656 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAA 1251597 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||||| || || || ||| |||||| ||||| | | Sbjct 1251596 GATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACATT 1251537 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||| |||| ||||| || || || |||| || ||||| Sbjct 1251536 CTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCAC 1251477 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1251476 GAAGATCTGCAT 1251465 >seq2965 Length=1497097 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| ||| |||| ||||||||||| || || || Sbjct 1204077 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAA 1204018 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || ||||||||| |||||| ||| | | | Sbjct 1204017 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATT 1203958 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || || | || ||||| Sbjct 1203957 CTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 1203898 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1203897 GAAGATCTGCAT 1203886 Score = 102 bits (112), Expect = 7e-17 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| ||| |||| ||||||||||| || || || Sbjct 1203849 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAA 1203790 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || ||||||||| |||||| ||| | | | Sbjct 1203789 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATT 1203730 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || || | || || || Sbjct 1203729 CTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTTAC 1203670 Query 35725 AAATATCTGCAT--TCTGTG 35742 || |||||||| |||||| Sbjct 1203669 GAAGATCTGCATTGTCTGTG 1203650 >seq3063 Length=7952490 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||| |||||||||||||||| | | Sbjct 5877729 CCACCACGGAGTCTCAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGAC 5877670 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | | || ||||| |||||||| |||| |||| || ||||| || | |||| Sbjct 5877669 AAAGTGCATCCATCTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGA 5877610 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| || |||||| ||| | | || | | |||| | | || ||| Sbjct 5877609 ATTCCTTCCTTATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTTGGAGGGCTCAACC 5877550 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | | ||||| || | ||||| | ||||| || || |||||||| Sbjct 5877549 TGGAGGGTGATGGTCCTCCCCGTAAGGGTTTTTACGAAAATCTGCAT 5877503 >seq3105 Length=21505965 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 35512 ACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAA 35571 |||||| | |||||||| | ||| | || ||||||||||||||||||||| | ||| Sbjct 7417338 ACCACGGAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAA 7417397 Query 35572 GGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAAC 35631 || || | || ||||| || || | ||||| |||| || ||||| || | ||||| Sbjct 7417398 AGTACGTCCATCTTCCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAAT 7417457 Query 35632 GCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTC 35691 | ||||| ||| |||||| ||| | | || | | ||||| | ||| ||| Sbjct 7417458 TCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTC 7417517 Query 35692 CACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || || || ||||| ||||| ||| |||| Sbjct 7417518 GTGGATGATGGTCTTCCCTGTAAAGGTTTTTACAAAAATCGGCAT 7417562 >seq2997 Length=2481227 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||| | | |||||||| | ||| | || ||||||||||||||||||| | | | Sbjct 411712 CCACCATGGAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGAC 411653 Query 35570 AAGGTTC-GCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 || || | | || ||||| |||||||| ||||| |||| || ||||| || | ||| Sbjct 411652 AAAGTACATCCAATCTTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGG 411593 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 || | ||||| ||| |||||| ||| | | || | || ||||| | ||| || Sbjct 411592 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACAGTGTCCGAGGGTTCAAC 411533 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||| | || || ||| | | ||||| | || ||||| || Sbjct 411532 CTCGA-GGTGGTGGTCTTCCCCATAACGGTTTTTATGAAAATCTGTAT 411486 >seq3061 Length=7642621 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||| | || |||| ||| | ||| | || |||||||||||||||||||||| | | Sbjct 2174644 CCACCATGGAATCTCAGCACAAGATGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGAC 2174585 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | | || ||||| ||||| ||||| |||| || || || || | |||| Sbjct 2174584 AAAGTGCATCCATCTTCCAG----TTACCAGCAAAGATCAGCCTTTGTTGATCAGGAGGA 2174529 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | || ||||| | ||| || Sbjct 2174528 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCC 2174469 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 | | ||||| || || || || || | ||| | || |||||||| ||| Sbjct 2174468 TTGAGGGTGATGGTCTTTCCTGT-AAGGGTTTTATGAAAATCTGCATCCTG 2174419 >seq3135 Length=60673567 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/201 (71%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || ||||||||||| || | | || || |||| |||||||| || || ||||| Sbjct 60530414 CTCTTTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCCGGCAAA 60530355 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || || || ||||||| | || | || |||||||| ||| ||| |||| | Sbjct 60530354 TACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGAT-TTTGGCTTTGACAT 60530296 Query 35665 TGCCAC-CGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | ||| |||||||| | || ||||| | ||||| || || ||| | | || |||| Sbjct 60530295 TCTCACTGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCCTTAGGGTCTTCA 60530236 Query 35724 CAAATATCTGCATTCTGTGCG 35744 | |||||||||| ||| |||| Sbjct 60530235 CGAATATCTGCA-TCTCTGCG 60530216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450775883811520