Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3082 116 4e-21 seq2965 104 2e-17 seq3063 87.8 2e-12 seq3135 86.0 6e-12 >seq3082 Length=10725151 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| ||| ||||| || ||||| || || || ||||||||||| | Sbjct 1251463 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1251404 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| ||||||||||| || | | |||||| || || || Sbjct 1251403 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGA 1251344 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || || || || || || | |||||| | ||||| Sbjct 1251343 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 1251284 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || || || | ||| || ||||| || ||||| Sbjct 1251283 TCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1251237 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| ||| ||||| || ||||| || || || ||||||||||| | Sbjct 1251235 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1251176 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| ||||||||||| || | | |||||| || || || Sbjct 1251175 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGA 1251116 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | |||||| | ||||| Sbjct 1251115 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 1251056 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || | || ||||| || || || | ||||| ||||| |||||||||||| Sbjct 1251055 TCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTTG 1251005 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || ||||| || || || || || || ||||||||||| | Sbjct 1251691 CCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAA 1251632 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| ||||||||||| || | | |||||| || || || Sbjct 1251631 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 1251572 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || || || || || || | ||||| | ||||| Sbjct 1251571 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACT 1251512 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 1251511 TCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465 >seq2965 Length=1497097 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || |||| || ||||| || ||||| ||||| || |||||||||||| Sbjct 1204112 CCTCCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1204053 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| ||||| || || |||| | |||||| || || || Sbjct 1204052 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGG 1203993 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || ||||| || || ||||| || | ||||| | || || Sbjct 1203992 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACC 1203933 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || | || || ||||| || ||||| Sbjct 1203932 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 1203886 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| || ||||| || ||||| ||||| || ||||||||||| Sbjct 1203884 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1203825 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| ||||| || || |||| | |||||| || || || Sbjct 1203824 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGG 1203765 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || ||||| || || ||||| || | ||||| | || || Sbjct 1203764 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACC 1203705 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| || || || | || || ||||| || |||||| Sbjct 1203704 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCATT 1203657 >seq3063 Length=7952490 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||||| |||||| || || || ||||| ||| ||||||||||||| || | | Sbjct 5877729 CCACCACGGAGTCTCAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGAC 5877670 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| || || || || || || |||| |||| | |||||||| || || Sbjct 5877669 AA-AGTGCATCCATCTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGG 5877611 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||| || || || || || | |||| ||| | || || Sbjct 5877610 AATTCCTTCCTTATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTTGGAGGGCTCAAC 5877551 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | ||| || ||||| | || || | ||||| |||||||| ||||| ||| Sbjct 5877550 CTGGAGGGTGATGGTCCTCCCCGTAAGGGTTTTTACGAAAATCTGCATCTTG 5877499 >seq3135 Length=60673567 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 134519 GGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGC 134578 ||| || || |||||||||||||| | || || ||| || ||||||||||| || Sbjct 60530417 GGACTCTTTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCCGGC 60530358 Query 134579 AAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGAC 134638 ||| | || || |||| ||||| || |||||||| || ||||| ||||| |||||| Sbjct 60530357 AAATACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTGAC 60530298 Query 134639 CGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTT 134698 || |||||| | || || || || || ||||| || || ||| || || Sbjct 60530297 ATTCTCACTGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCCTTAGGGTCTT 60530238 Query 134699 AACGAAAATTTGCAT 134713 ||||| || ||||| Sbjct 60530237 CACGAATATCTGCAT 60530223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505378537842880