Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3106 358 9e-94 seq3040 118 1e-21 seq3018 102 1e-16 >seq3106 Length=22756556 Score = 358 bits (396), Expect = 9e-94 Identities = 621/895 (69%), Gaps = 16/895 (2%) Strand=Plus/Minus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 |||||||||||||| | || || || || || | ||||| || || || || || ||| Sbjct 217572 GACATAACTCCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCT 217513 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATT--ATAtttttttttAA 39428 || | || ||||| |||||||| ||||| ||||| || || | | | || || Sbjct 217512 TCTAGAGAAATATTCTCCATGAAGTCAAATGGATT--TTCCACTTGAAAAACCTTGCCAA 217455 Query 39429 ATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCAC 39488 | || | ||| || | || || || || || || ||||| ||||| | || | Sbjct 217454 AGCCCAGCTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGC 217395 Query 39489 AATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCT- 39547 | ||||| || || || || ||||| | |||||||| || ||||| | ||||| ||| Sbjct 217394 AGTTCATGCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGAT-TCTG 217336 Query 39548 ACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTC--GGTGGATGCAATAAATGTT 39605 ||||| | || ||| | || |||| | || ||| ||||| | || | Sbjct 217335 ACGGCGTTGACGATAATCTCCTTCAC--CCTCTGCTCTGAGGGTCTATGCATCAGGTGCT 217278 Query 39606 TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAG 39665 | ||||| | ||||||||||||||| || |||||||||||||| || || | ||| || | Sbjct 217277 TGAACATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGG 217218 Query 39666 AAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATC 39725 |||| ||||| || ||||| || || || || || ||||| || || | |||||||| | Sbjct 217217 AAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAAC 217158 Query 39726 CAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTAT 39785 ||||||| ||||||||||| || || ||||| || || | | || || ||| | | | Sbjct 217157 CAGAAAAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCT 217098 Query 39786 CATTAT---GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842 | || | ||||| | ||||| || | |||||| ||||| ||||| || | Sbjct 217097 CTTTGTCCCCAATCCAGCGCAAGGCCCAGTCCG---ACTTCTTCACACAGGGCATGGTCT 217041 Query 39843 CTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACA 39902 | || ||||| ||||| | | |||| |||||| | ||| ||||| || | | Sbjct 217040 CGATGGCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGA 216981 Query 39903 GACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTG 39962 |||| |||||||| ||||| |||||||| || || ||||| || ||||| ||||| | | Sbjct 216980 GACTGTACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAG 216921 Query 39963 CTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022 | || || ||||| || ||| | || | ||| ||||||| ||||| ||||| |||| Sbjct 216920 CCTCTGTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCAT 216861 Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082 | || |||||||| || |||| || ||| ||||| ||| | || ||||| ||| Sbjct 216860 CGCTGGCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGG 216801 Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 | ||||| | || ||||| || | ||| || || || || |||||||| || |||| Sbjct 216800 CTTCCCAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCT 216741 Query 40143 CTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 | || || || ||||| | ||| || ||| | |||| || || || || ||||| Sbjct 216740 CGGCTTTCTTATACATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686 >seq3040 Length=4637412 Score = 118 bits (130), Expect = 1e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || ||||||||||| ||||| | || Sbjct 3956947 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 3956888 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| |||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 3956887 TCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 3956828 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 3956827 TTTCTTACACCAT 3956815 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| ||||||||||| || | || ||||| |||| | | Sbjct 3941767 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 3941708 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| ||||||||||| || || | ||| |||||||| | || || ||||||| || Sbjct 3941707 TCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 3941648 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 3941647 TCCAGGTAAATAGC 3941634 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || ||||| || ||||| ||||| | ||||| || |||||| Sbjct 3936213 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAGAGAAGATTG 3936154 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||||||| || | ||||| || | |||||||| | | || | ||||||| Sbjct 3936153 TATGTTTCAATTGCAGCATCTATGTCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 3936094 Query 70111 ATATGCTGAGGTCGTTC 70127 ||||| || |||| ||| Sbjct 3936093 ATATGTTGCGGTCTTTC 3936077 >seq3018 Length=3443724 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || ||||| ||||| || ||||| || || || || | Sbjct 3376780 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 3376839 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || || | |||||||| |||||||| ||||||||||| || || ||||| | Sbjct 3376840 TCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCACAGCAGCAAAGG 3376899 Query 39759 CAAC 39762 | || Sbjct 3376900 CTAC 3376903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686881804484160