Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 358 9e-94
seq3040 118 1e-21
seq3018 102 1e-16
>seq3106
Length=22756556
Score = 358 bits (396), Expect = 9e-94
Identities = 621/895 (69%), Gaps = 16/895 (2%)
Strand=Plus/Minus
Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370
|||||||||||||| | || || || || || | ||||| || || || || || |||
Sbjct 217572 GACATAACTCCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCT 217513
Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATT--ATAtttttttttAA 39428
|| | || ||||| |||||||| ||||| ||||| || || | | | || ||
Sbjct 217512 TCTAGAGAAATATTCTCCATGAAGTCAAATGGATT--TTCCACTTGAAAAACCTTGCCAA 217455
Query 39429 ATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCAC 39488
| || | ||| || | || || || || || || ||||| ||||| | || |
Sbjct 217454 AGCCCAGCTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGC 217395
Query 39489 AATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCT- 39547
| ||||| || || || || ||||| | |||||||| || ||||| | ||||| |||
Sbjct 217394 AGTTCATGCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGAT-TCTG 217336
Query 39548 ACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTC--GGTGGATGCAATAAATGTT 39605
||||| | || ||| | || |||| | || ||| ||||| | || |
Sbjct 217335 ACGGCGTTGACGATAATCTCCTTCAC--CCTCTGCTCTGAGGGTCTATGCATCAGGTGCT 217278
Query 39606 TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAG 39665
| ||||| | ||||||||||||||| || |||||||||||||| || || | ||| || |
Sbjct 217277 TGAACATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGG 217218
Query 39666 AAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATC 39725
|||| ||||| || ||||| || || || || || ||||| || || | |||||||| |
Sbjct 217217 AAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAAC 217158
Query 39726 CAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTAT 39785
||||||| ||||||||||| || || ||||| || || | | || || ||| | | |
Sbjct 217157 CAGAAAAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCT 217098
Query 39786 CATTAT---GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842
| || | ||||| | ||||| || | |||||| ||||| ||||| || |
Sbjct 217097 CTTTGTCCCCAATCCAGCGCAAGGCCCAGTCCG---ACTTCTTCACACAGGGCATGGTCT 217041
Query 39843 CTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACA 39902
| || ||||| ||||| | | |||| |||||| | ||| ||||| || | |
Sbjct 217040 CGATGGCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGA 216981
Query 39903 GACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTG 39962
|||| |||||||| ||||| |||||||| || || ||||| || ||||| ||||| | |
Sbjct 216980 GACTGTACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAG 216921
Query 39963 CTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022
| || || ||||| || ||| | || | ||| ||||||| ||||| ||||| ||||
Sbjct 216920 CCTCTGTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCAT 216861
Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082
| || |||||||| || |||| || ||| ||||| ||| | || ||||| |||
Sbjct 216860 CGCTGGCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGG 216801
Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142
| ||||| | || ||||| || | ||| || || || || |||||||| || ||||
Sbjct 216800 CTTCCCAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCT 216741
Query 40143 CTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197
| || || || ||||| | ||| || ||| | |||| || || || || |||||
Sbjct 216740 CGGCTTTCTTATACATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686
>seq3040
Length=4637412
Score = 118 bits (130), Expect = 1e-21
Identities = 106/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| || || || ||||| |||||||| || ||||||||||| ||||| | ||
Sbjct 3956947 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 3956888
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
|||||||| |||| || ||||||||||| ||||| ||||| || || | | ||||||
Sbjct 3956887 TCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 3956828
Query 68839 TTTCTAAGACCAT 68851
||||| | |||||
Sbjct 3956827 TTTCTTACACCAT 3956815
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654
||||||||||| || ||||| ||||||||||| || | || ||||| |||| | |
Sbjct 3941767 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 3941708
Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714
||||| ||||||||||| || || | ||| |||||||| | || || ||||||| ||
Sbjct 3941707 TCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 3941648
Query 69715 TCTAGATATATCGC 69728
|| || || || ||
Sbjct 3941647 TCCAGGTAAATAGC 3941634
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
|| || ||||| || | || ||||| || ||||| ||||| | ||||| || ||||||
Sbjct 3936213 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAGAGAAGATTG 3936154
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
||||||||||| || | ||||| || | |||||||| | | || | |||||||
Sbjct 3936153 TATGTTTCAATTGCAGCATCTATGTCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 3936094
Query 70111 ATATGCTGAGGTCGTTC 70127
||||| || |||| |||
Sbjct 3936093 ATATGTTGCGGTCTTTC 3936077
>seq3018
Length=3443724
Score = 102 bits (112), Expect = 1e-16
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | ||| || ||||| ||||| || ||||| || || || || |
Sbjct 3376780 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 3376839
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||| || || | |||||||| |||||||| ||||||||||| || || ||||| |
Sbjct 3376840 TCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCACAGCAGCAAAGG 3376899
Query 39759 CAAC 39762
| ||
Sbjct 3376900 CTAC 3376903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686881804484160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |