Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3106 241 1e-58 seq3113 143 2e-29 seq3018 105 5e-18 >seq3106 Length=22756556 Score = 241 bits (266), Expect = 1e-58 Identities = 414/593 (70%), Gaps = 16/593 (3%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | || || || |||| |||||||| ||||| ||||| || ||||| |||| Sbjct 216686 TTTGTCATCTTCCCTATCGAATACCATGACATTTGGCAGATGTATAAGAAAGCCGAGGCC 216745 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817 || |||||||| ||||| || || ||| | | |||||| | ||||| ||| || Sbjct 216746 TCCTTTTGGACGGCAGAGGAGGTGGATCTTTCCAAAGACATTCAGCAC--TGGGAAGCCC 216803 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 | || || | || | | | |||||||| ||| |||| || ||||| || ||||| | Sbjct 216804 TGAAGCCCGAGGAGAGATACTTTATATCACACGTTCTGGCTTTCTTTGCCGCCAGCGATG 216863 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCAC 43937 | ||||||||||| |||||||| ||||| |||||||||||| | |||| || | Sbjct 216864 GCATAGTCAATGAGAATTTGGTGGAGCGGTTCAGCCAAGAAGTTCAAATCACAGAGGCTC 216923 Query 43938 GATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTC 43997 | ||||| || || || || || ||||| ||||| |||||||| |||||||||||||| | Sbjct 216924 GCTGTTTCTACGGCTTCCAGATCGCCATGGAAAACATTCATTCTGAAATGTACAGTCTCC 216983 Query 43998 TGATAGATACGTACATCAAAGATGGGCACGAGAA--GCATCGATTGTTTAATGCGATAGA 44055 | || ||||| || ||||||||| | ||||| | | | || ||||| || || Sbjct 216984 TCATCGATACTTATATCAAAGAT--TCCAGAGAAAGGGAGTTCCTCTTCAATGCCATCGA 217041 Query 44056 -AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAA 44111 | || |||| | | | | || | ||||||||| | ||||| | | Sbjct 217042 GACCATGCCCTGTG-TGA---AGAAGTCGGACTGGGCCTTGCGCTGGATTGGGGACAAAG 217097 Query 44112 ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG 44171 | | ||| ||| ||||| | || || ||||| | ||||||||||| || ||||| | Sbjct 217098 AGGCCACTTATGGGGAACGCGTGGTAGCCTTTGCTGCCGTGGAAGGCATCTTTTTTTCTG 217157 Query 44172 GATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTT 44231 | || |||||| | || || ||| | |||||||| || | ||||| || | || |||| Sbjct 217158 GTTCTTTTGCGTCGATCTTCTGGCTGAAGAAACGGGGACTCATGCCCGGCCTCACCTTTT 217217 Query 44232 CAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | ||||| | || || | ||||| ||| | || || || || || ||| || Sbjct 217218 CCAATGAACTCATCAGCAGAGATGAGGGCCTGCACTGTGACTTCGCCTGCCTG 217270 >seq3113 Length=25888900 Score = 143 bits (158), Expect = 2e-29 Identities = 478/733 (65%), Gaps = 22/733 (3%) Strand=Plus/Plus Query 19220 ATTGGAA-TGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTT 19278 ||||||| | ||||| | ||| ||| ||||| || ||||| ||||| || || ||| Sbjct 13629316 ATTGGAACTTTGAAAAA-ATGGGAATAGGAGGTCTGGACAAAGAATTTTCAGATATTTTT 13629374 Query 19279 CGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAA 19338 || ||||||||| || || || ||| || |||| | | |||| |||| |||||| Sbjct 13629375 CGACGAGCATTTGCTTCCCGAGTATTTCCTCCAGAGATTGTGGAACAGATGGGTTGTAAA 13629434 Query 19339 CATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGA 19398 |||||| || | || | |||||||| || || ||||| || || | | || | Sbjct 13629435 CATGTTAAAGGCATCCTGTTATATGGGCCCCCAGGATGTGGTAAGACTCTCTTGGCTCTA 13629494 Query 19399 GAACTTAGTAAATTACTTA---CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAA-T 19454 | || | || | | | ||| | | || |||| | || ||||| || |||| | Sbjct 13629495 CAGATTGGCAAGATGTTGAATGCAAGAGAGCC---CAAAGTGGTCAATGGACCAGAAAAT 13629551 Query 19455 CTTAAATAAATATGTAGGTCAATCGGAAG--AAAATGTACGACGTTTGTTTGCTGACGCT 19512 ||||| |||||||| ||| |||| || | || || || | ||| ||||||| ||| Sbjct 13629552 CTTAAC-AAATATGTGGGTGAATCAGAGGCTAACATTCACAAACTTT--TTGCTGATGCT 13629608 Query 19513 GAAGAAGAACAAAA-ACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGA 19571 ||||| || |||| | | || | || || | | ||||||||| || || | ||||| Sbjct 13629609 GAAGAGGAGCAAAGGAGGCTTGGTGCT-AACACTGGTTTGCACATCATCATCTTTGATGA 13629667 Query 19572 ATTGGACGCAATCTGTAAGCAAAGAGGTT------CTGGTGTAAATGGAGTACATGACAC 19625 | | || || ||||| || || ||||| ||||| | ||| | || |||| Sbjct 13629668 AATTGATGCCATCTGCAAACAGAGAGGGAGCATGGCTGGTAGCACTGGGATTCACAACAC 13629727 Query 19626 TGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGT 19685 |||||||||||| | |||| ||| | || || || | || ||||| || || | || Sbjct 13629728 TGTTGTCAATCAGTTGTTGTCCAAAATTGATGGGGTAGAGCAGCTGAACAACATCCTTGT 13629787 Query 19686 TATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTT 19745 ||||| ||||| ||||||| || | || || || | | | ||| || | | Sbjct 13629788 CATTGGAATGACCAATAGACCAGATCTGATTGATGAGGCTCTCCTTCAACCTGGAAGACT 13629847 Query 19746 GGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACAT 19805 |||| | || || || || ||| || ||||| || || | | || | |||| Sbjct 13629848 GGAAGTCAAAATGGAGATAGGCTTGCCAGATGAGAAAGGTCGACTACAGATCCTTCACAT 13629907 Query 19806 ACATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAAT 19865 || ||| ||| ||| || | || | | | | ||||||||| | ||||| | Sbjct 13629908 CCACACAGCAAGGATGAGAGACCATCAATTGCTCTCTACTGATGTAGATATTAAAGAACT 13629967 Query 19866 TGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGCCCA 19925 || | || ||||| || | || || || ||||| ||||| | ||| | || || || Sbjct 13629968 GGCTGTGGAGACCAAGAATTTCAGTGGTGCTGAACTGGAGGGTCTGGTGCGAGCAGCACA 13630027 Query 19926 ATCAATTGCAATG 19938 || | ||| ||| Sbjct 13630028 GTCCACTGCTATG 13630040 >seq3018 Length=3443724 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||||||| | |||| || || ||||| || || || || || ||||| ||||| Sbjct 3378111 CAAGAAGTTCAAATCACAGAGGCTCGCTGTTTCTACGGCTTCCAGATCGCCATGGAAAAC 3378052 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||||||| |||||||||||||| || || ||||| || ||||||||| Sbjct 3378051 ATTCATTCCGAAATGTACAGTCTCCTCATCGATACTTATATCAAAGAT 3378004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397440770479720