Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 241 1e-58
seq3113 143 2e-29
seq3018 105 5e-18
>seq3106
Length=22756556
Score = 241 bits (266), Expect = 1e-58
Identities = 414/593 (70%), Gaps = 16/593 (3%)
Strand=Plus/Plus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|||||| | || || || |||| |||||||| ||||| ||||| || ||||| ||||
Sbjct 216686 TTTGTCATCTTCCCTATCGAATACCATGACATTTGGCAGATGTATAAGAAAGCCGAGGCC 216745
Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817
|| |||||||| ||||| || || ||| | | |||||| | ||||| ||| ||
Sbjct 216746 TCCTTTTGGACGGCAGAGGAGGTGGATCTTTCCAAAGACATTCAGCAC--TGGGAAGCCC 216803
Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877
| || || | || | | | |||||||| ||| |||| || ||||| || ||||| |
Sbjct 216804 TGAAGCCCGAGGAGAGATACTTTATATCACACGTTCTGGCTTTCTTTGCCGCCAGCGATG 216863
Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCAC 43937
| ||||||||||| |||||||| ||||| |||||||||||| | |||| || |
Sbjct 216864 GCATAGTCAATGAGAATTTGGTGGAGCGGTTCAGCCAAGAAGTTCAAATCACAGAGGCTC 216923
Query 43938 GATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTC 43997
| ||||| || || || || || ||||| ||||| |||||||| |||||||||||||| |
Sbjct 216924 GCTGTTTCTACGGCTTCCAGATCGCCATGGAAAACATTCATTCTGAAATGTACAGTCTCC 216983
Query 43998 TGATAGATACGTACATCAAAGATGGGCACGAGAA--GCATCGATTGTTTAATGCGATAGA 44055
| || ||||| || ||||||||| | ||||| | | | || ||||| || ||
Sbjct 216984 TCATCGATACTTATATCAAAGAT--TCCAGAGAAAGGGAGTTCCTCTTCAATGCCATCGA 217041
Query 44056 -AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAA 44111
| || |||| | | | | || | ||||||||| | ||||| | |
Sbjct 217042 GACCATGCCCTGTG-TGA---AGAAGTCGGACTGGGCCTTGCGCTGGATTGGGGACAAAG 217097
Query 44112 ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG 44171
| | ||| ||| ||||| | || || ||||| | ||||||||||| || ||||| |
Sbjct 217098 AGGCCACTTATGGGGAACGCGTGGTAGCCTTTGCTGCCGTGGAAGGCATCTTTTTTTCTG 217157
Query 44172 GATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTT 44231
| || |||||| | || || ||| | |||||||| || | ||||| || | || ||||
Sbjct 217158 GTTCTTTTGCGTCGATCTTCTGGCTGAAGAAACGGGGACTCATGCCCGGCCTCACCTTTT 217217
Query 44232 CAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284
| ||||| | || || | ||||| ||| | || || || || || ||| ||
Sbjct 217218 CCAATGAACTCATCAGCAGAGATGAGGGCCTGCACTGTGACTTCGCCTGCCTG 217270
>seq3113
Length=25888900
Score = 143 bits (158), Expect = 2e-29
Identities = 478/733 (65%), Gaps = 22/733 (3%)
Strand=Plus/Plus
Query 19220 ATTGGAA-TGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTT 19278
||||||| | ||||| | ||| ||| ||||| || ||||| ||||| || || |||
Sbjct 13629316 ATTGGAACTTTGAAAAA-ATGGGAATAGGAGGTCTGGACAAAGAATTTTCAGATATTTTT 13629374
Query 19279 CGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAA 19338
|| ||||||||| || || || ||| || |||| | | |||| |||| ||||||
Sbjct 13629375 CGACGAGCATTTGCTTCCCGAGTATTTCCTCCAGAGATTGTGGAACAGATGGGTTGTAAA 13629434
Query 19339 CATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGA 19398
|||||| || | || | |||||||| || || ||||| || || | | || |
Sbjct 13629435 CATGTTAAAGGCATCCTGTTATATGGGCCCCCAGGATGTGGTAAGACTCTCTTGGCTCTA 13629494
Query 19399 GAACTTAGTAAATTACTTA---CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAA-T 19454
| || | || | | | ||| | | || |||| | || ||||| || |||| |
Sbjct 13629495 CAGATTGGCAAGATGTTGAATGCAAGAGAGCC---CAAAGTGGTCAATGGACCAGAAAAT 13629551
Query 19455 CTTAAATAAATATGTAGGTCAATCGGAAG--AAAATGTACGACGTTTGTTTGCTGACGCT 19512
||||| |||||||| ||| |||| || | || || || | ||| ||||||| |||
Sbjct 13629552 CTTAAC-AAATATGTGGGTGAATCAGAGGCTAACATTCACAAACTTT--TTGCTGATGCT 13629608
Query 19513 GAAGAAGAACAAAA-ACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGA 19571
||||| || |||| | | || | || || | | ||||||||| || || | |||||
Sbjct 13629609 GAAGAGGAGCAAAGGAGGCTTGGTGCT-AACACTGGTTTGCACATCATCATCTTTGATGA 13629667
Query 19572 ATTGGACGCAATCTGTAAGCAAAGAGGTT------CTGGTGTAAATGGAGTACATGACAC 19625
| | || || ||||| || || ||||| ||||| | ||| | || ||||
Sbjct 13629668 AATTGATGCCATCTGCAAACAGAGAGGGAGCATGGCTGGTAGCACTGGGATTCACAACAC 13629727
Query 19626 TGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGT 19685
|||||||||||| | |||| ||| | || || || | || ||||| || || | ||
Sbjct 13629728 TGTTGTCAATCAGTTGTTGTCCAAAATTGATGGGGTAGAGCAGCTGAACAACATCCTTGT 13629787
Query 19686 TATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTT 19745
||||| ||||| ||||||| || | || || || | | | ||| || | |
Sbjct 13629788 CATTGGAATGACCAATAGACCAGATCTGATTGATGAGGCTCTCCTTCAACCTGGAAGACT 13629847
Query 19746 GGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACAT 19805
|||| | || || || || ||| || ||||| || || | | || | ||||
Sbjct 13629848 GGAAGTCAAAATGGAGATAGGCTTGCCAGATGAGAAAGGTCGACTACAGATCCTTCACAT 13629907
Query 19806 ACATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAAT 19865
|| ||| ||| ||| || | || | | | | ||||||||| | ||||| |
Sbjct 13629908 CCACACAGCAAGGATGAGAGACCATCAATTGCTCTCTACTGATGTAGATATTAAAGAACT 13629967
Query 19866 TGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGCCCA 19925
|| | || ||||| || | || || || ||||| ||||| | ||| | || || ||
Sbjct 13629968 GGCTGTGGAGACCAAGAATTTCAGTGGTGCTGAACTGGAGGGTCTGGTGCGAGCAGCACA 13630027
Query 19926 ATCAATTGCAATG 19938
|| | ||| |||
Sbjct 13630028 GTCCACTGCTATG 13630040
>seq3018
Length=3443724
Score = 105 bits (116), Expect = 5e-18
Identities = 88/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972
|||||||||||| | |||| || || ||||| || || || || || ||||| |||||
Sbjct 3378111 CAAGAAGTTCAAATCACAGAGGCTCGCTGTTTCTACGGCTTCCAGATCGCCATGGAAAAC 3378052
Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|||||||| |||||||||||||| || || ||||| || |||||||||
Sbjct 3378051 ATTCATTCCGAAATGTACAGTCTCCTCATCGATACTTATATCAAAGAT 3378004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397440770479720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |