Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq3106 87.8 6e-12 >seq3106 Length=22756556 Score = 87.8 bits (96), Expect = 6e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 443715 GTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTG 443774 || || ||||||| || ||||| | || ||| || |||| || || |||||||| Sbjct 217121 GTAGCCTTTGCTGCCGTGGAAGGCATCTTTTTTTCTGGTT-CTTTTGCGTCGATCTTCTG 217179 Query 443775 GTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGA 443834 | |||| || || ||||| |||| ||| || |||||| || ||||| ||||| | || Sbjct 217180 GCTGAAGAAACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCAGAGA 217239 Query 443835 CGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 ||||| |||| || ||||||||||| || Sbjct 217240 TGAGGGCCTGCACTGTGACTTCGCCTGCCT 217269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588272017855080