Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3040 82.4 1e-10 >seq3040 Length=4637412 Score = 82.4 bits (90), Expect = 1e-10 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || || || |||| |||||||| || | |||| | || || || || Sbjct 3943325 CTCATCTTTGCTGGTATATTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCC 3943266 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| ||||| ||||| || || | ||| |||||||||||||| || || || Sbjct 3943265 CAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACC 3943206 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 |||||| ||||| || | || ||| || | ||||| Sbjct 3943205 CGTCTCTGTCTGAGACTCGATAATGGCGTACCAAA 3943171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628007318342400