Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 109 7e-19
seq3018 86.0 8e-12
>seq3106
Length=22756556
Score = 109 bits (120), Expect = 7e-19
Identities = 383/581 (66%), Gaps = 19/581 (3%)
Strand=Plus/Minus
Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786
||| || || |||| |||||| ||||||||||||||||| || | |||||||||||
Sbjct 217552 ATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTCCAT 217493
Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGAC 129845
|| |||||||| || || | || ||| || || || | || | | ||| |
Sbjct 217492 GAAGTCAAATGGATT-TTCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGAGCC 217434
Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905
|| | ||| |||| ||||||| ||| |||| ||||||| || || || ||
Sbjct 217433 TGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCTTCA 217374
Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGC-TTCCCGCACGATGGCG 129964
||| | || ||| || |||| ||| ||| || || || || || | || |
Sbjct 217373 CTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACG-ATAATCTCC 217315
Query 129965 TGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTC---CACGGCAAA 130020
| | ||| | ||||||| || | || |||||| | || || ||| ||
Sbjct 217314 TTCACCCTCTGCTCTGAGGGTCTAT-GCATCAGGTGCTTGAACA--TCAGGCA-GGCGAA 217259
Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080
|| ||| || ||||| || | | |||||||||||| || ||| || || |||||
Sbjct 217258 GTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCAT 217199
Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGATCCCCT 130139
||| ||||| ||||||| |||||| |||| | ||||| || ||||| || ||||| || |
Sbjct 217198 GAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAA-GAACCAGAAAAAAAGATGCCTT 217140
Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCAC 130198
|||| || || || | | || || || | | | | |||||| ||| |||
Sbjct 217139 CCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTG-GCCTCTTTGTCCCCAATCCAG 217081
Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGT 130258
|| ||||| | || ||| ||| | ||| || | ||||| ||| || | |||||
Sbjct 217080 CGCAAGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGATGGCATTGAAGAGG 217024
Query 130259 TCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299
|| | ||||| | ||||||||| || |||| |||||
Sbjct 217023 AACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAG 216983
>seq3018
Length=3443724
Score = 86.0 bits (94), Expect = 8e-12
Identities = 87/111 (78%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094
|||| || | | |||||||||||| || ||| || || |||||||| ||||| ||||
Sbjct 3376780 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 3376839
Query 130095 TCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144
||| |||||| |||| | ||||| || ||||| || ||||| || ||||||
Sbjct 3376840 TCAGCCAGAAGATCGACGCAAAA-GAACCAGAAAAAAAGATGCCTTCCACA 3376889
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618410895496640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |