Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3106 109 7e-19 seq3018 86.0 8e-12 >seq3106 Length=22756556 Score = 109 bits (120), Expect = 7e-19 Identities = 383/581 (66%), Gaps = 19/581 (3%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || |||| |||||| ||||||||||||||||| || | ||||||||||| Sbjct 217552 ATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTCCAT 217493 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTGTTTGAGGAGAC 129845 || |||||||| || || | || ||| || || || | || | | ||| | Sbjct 217492 GAAGTCAAATGGATT-TTCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGAGCC 217434 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 || | ||| |||| ||||||| ||| |||| ||||||| || || || || Sbjct 217433 TGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCTTCA 217374 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGC-TTCCCGCACGATGGCG 129964 ||| | || ||| || |||| ||| ||| || || || || || | || | Sbjct 217373 CTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACG-ATAATCTCC 217315 Query 129965 TGAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTC---CACGGCAAA 130020 | | ||| | ||||||| || | || |||||| | || || ||| || Sbjct 217314 TTCACCCTCTGCTCTGAGGGTCTAT-GCATCAGGTGCTTGAACA--TCAGGCA-GGCGAA 217259 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || ||| || ||||| || | | |||||||||||| || ||| || || ||||| Sbjct 217258 GTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCAT 217199 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 ||| ||||| ||||||| |||||| |||| | ||||| || ||||| || ||||| || | Sbjct 217198 GAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAA-GAACCAGAAAAAAAGATGCCTT 217140 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCAC 130198 |||| || || || | | || || || | | | | |||||| ||| ||| Sbjct 217139 CCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTG-GCCTCTTTGTCCCCAATCCAG 217081 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGT 130258 || ||||| | || ||| ||| | ||| || | ||||| ||| || | ||||| Sbjct 217080 CGCAAGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGATGGCATTGAAGAGG 217024 Query 130259 TCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 || | ||||| | ||||||||| || |||| ||||| Sbjct 217023 AACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAG 216983 >seq3018 Length=3443724 Score = 86.0 bits (94), Expect = 8e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||| || | | |||||||||||| || ||| || || |||||||| ||||| |||| Sbjct 3376780 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 3376839 Query 130095 TCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 ||| |||||| |||| | ||||| || ||||| || ||||| || |||||| Sbjct 3376840 TCAGCCAGAAGATCGACGCAAAA-GAACCAGAAAAAAAGATGCCTTCCACA 3376889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618410895496640