Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 107 2e-18
seq3018 98.7 1e-15
seq3090 93.3 5e-14
seq3143 91.5 2e-13
>seq3106
Length=22756556
Score = 107 bits (118), Expect = 2e-18
Identities = 307/452 (68%), Gaps = 24/452 (5%)
Strand=Plus/Minus
Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521
||| || || |||| ||| ||||| ||||| ||||||||||| | || || ||||||||
Sbjct 217552 ATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTCCAT 217493
Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAG 74578
|||| || || || || ||| ||| | ||| | || | || | ||||||
Sbjct 217492 GAAGTCAAATGGATT--TTCCACTTGAAAAAC-CTTGCCAAAGCCCAGCTCTAGCATGAG 217436
Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCA-TCCATGCCGATGAGTT 74637
| || ||||| || | ||||||||| |||| | |||| | |||||| || || |
Sbjct 217435 CCTGTCAGCCACGAACTCGATGTACTGCTTCATGAG-CTCGCAGTTCATGCCAATCAGCT 217377
Query 74638 TGCAC-GGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAA 74694
| ||| |||| ||||| |||| ||||| ||| | || | | | ||| || ||
Sbjct 217376 T-CACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGAT-TCTGACGGCG-TTGACGATAA 217320
Query 74695 TCTTGTGAATG-TCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACG 74750
||| | | ||| | || || | | | | ||||||| | | | | | || |
Sbjct 217319 TCTCCTTCACCCTCTGCTCTGAGGGTC---TATGCATCAGGTGCTTGAACATCAGGCA-G 217264
Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810
|| || || ||| ||| ||||||||||| || | |||||| ||||| | |||||
Sbjct 217263 GCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCG 217204
Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGAT 74869
||||| ||||| || ||||||| ||| ||||| | | || ||| ||||| || |||||
Sbjct 217203 GGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAG-AACCAGAAAAAAAGAT 217145
Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTT 74901
|||||| || |||||||| || | |||||
Sbjct 217144 GCCTTCCACGGCAGCAAAGGCTACCACGCGTT 217113
>seq3018
Length=3443724
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/131 (78%), Gaps = 2/131 (2%)
Strand=Plus/Plus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| ||||| | ||||| ||||| ||||| || ||||||
Sbjct 3376782 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTC 3376841
Query 74832 AACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890
| ||| ||||| | | || || |||||| || ||||||||||| ||| ||||||||
Sbjct 3376842 AGCCAGAAGATCGACGCA-AAAGAACCAGAAAAAAAGATGCCTTCCACAGCAGCAAAGGC 3376900
Query 74891 GACAAGGCGTT 74901
|| | |||||
Sbjct 3376901 TACCACGCGTT 3376911
>seq3090
Length=12971536
Score = 93.3 bits (102), Expect = 5e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | || || | |||||||||||| ||||| || ||||||||
Sbjct 10823966 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTGCCAAACTGA 10824025
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144
||| ||| | | |||||| | || ||| |||||| |||||||||||||||||
Sbjct 10824026 CCAATGGGTTGCAAGAGGTTCACATTATTGCTGCCCACAAAATTCTGAGCCAAATT 10824081
Score = 87.8 bits (96), Expect = 2e-12
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| ||||| |||| || |||| ||||||||||||| || | || || || ||
Sbjct 10823966 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTGCCAAACTGA 10824025
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422
||| | || | ||||||||||| || ||| ||||||||| || |||||||| ||||
Sbjct 10824026 CCAATGGGTTGCAAGAGGTTCACATTATTGCTGCCCACAAAATTCTGAGCCAAATTGA 10824083
>seq3143
Length=88675666
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| ||||||| |||||||||||| ||||||||| ||| || || || || ||
Sbjct 71028950 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 71028891
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| | | ||| | || || ||||||||||| |||||||| || |||
Sbjct 71028890 CCAATGGGCTGAAGCAAGTTAATATTATTACTTCCCACAAAGTTCTGAGCCAAATTCACA 71028831
Query 117425 ATCGT 117429
|| ||
Sbjct 71028830 ATAGT 71028826
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||| || || || | ||| || ||||| |||||||| ||||| |||||||||||
Sbjct 71028950 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 71028891
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| || | ||| | || || ||||| || ||||||||||||||||||
Sbjct 71028890 CCAATGGGCTGAAGCAAGTTAATATTATTACTTCCCACAAAGTTCTGAGCCAAATTCACA 71028831
Query 152149 ATCGT 152153
|| ||
Sbjct 71028830 ATAGT 71028826
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547194494411200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |