Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3106 107 2e-18 seq3018 98.7 1e-15 seq3090 93.3 5e-14 seq3143 91.5 2e-13 >seq3106 Length=22756556 Score = 107 bits (118), Expect = 2e-18 Identities = 307/452 (68%), Gaps = 24/452 (5%) Strand=Plus/Minus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| || || |||| ||| ||||| ||||| ||||||||||| | || || |||||||| Sbjct 217552 ATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTCCAT 217493 Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAG 74578 |||| || || || || ||| ||| | ||| | || | || | |||||| Sbjct 217492 GAAGTCAAATGGATT--TTCCACTTGAAAAAC-CTTGCCAAAGCCCAGCTCTAGCATGAG 217436 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCA-TCCATGCCGATGAGTT 74637 | || ||||| || | ||||||||| |||| | |||| | |||||| || || | Sbjct 217435 CCTGTCAGCCACGAACTCGATGTACTGCTTCATGAG-CTCGCAGTTCATGCCAATCAGCT 217377 Query 74638 TGCAC-GGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAA 74694 | ||| |||| ||||| |||| ||||| ||| | || | | | ||| || || Sbjct 217376 T-CACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGAT-TCTGACGGCG-TTGACGATAA 217320 Query 74695 TCTTGTGAATG-TCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACG 74750 ||| | | ||| | || || | | | | ||||||| | | | | | || | Sbjct 217319 TCTCCTTCACCCTCTGCTCTGAGGGTC---TATGCATCAGGTGCTTGAACATCAGGCA-G 217264 Query 74751 GCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCA 74810 || || || ||| ||| ||||||||||| || | |||||| ||||| | ||||| Sbjct 217263 GCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCG 217204 Query 74811 GGCATAAGTCCACGCTTCTTCAACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGAT 74869 ||||| ||||| || ||||||| ||| ||||| | | || ||| ||||| || ||||| Sbjct 217203 GGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAG-AACCAGAAAAAAAGAT 217145 Query 74870 GCCTTCGACACACGCAAAGGCGACAAGGCGTT 74901 |||||| || |||||||| || | ||||| Sbjct 217144 GCCTTCCACGGCAGCAAAGGCTACCACGCGTT 217113 >seq3018 Length=3443724 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/131 (78%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||||| ||||| ||||| || |||||| Sbjct 3376782 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTC 3376841 Query 74832 AACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| ||||| | | || || |||||| || ||||||||||| ||| |||||||| Sbjct 3376842 AGCCAGAAGATCGACGCA-AAAGAACCAGAAAAAAAGATGCCTTCCACAGCAGCAAAGGC 3376900 Query 74891 GACAAGGCGTT 74901 || | ||||| Sbjct 3376901 TACCACGCGTT 3376911 >seq3090 Length=12971536 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 10823966 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTGCCAAACTGA 10824025 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 ||| ||| | | |||||| | || ||| |||||| ||||||||||||||||| Sbjct 10824026 CCAATGGGTTGCAAGAGGTTCACATTATTGCTGCCCACAAAATTCTGAGCCAAATT 10824081 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| ||||||||||||| || | || || || || Sbjct 10823966 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTGCCAAACTGA 10824025 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 ||| | || | ||||||||||| || ||| ||||||||| || |||||||| |||| Sbjct 10824026 CCAATGGGTTGCAAGAGGTTCACATTATTGCTGCCCACAAAATTCTGAGCCAAATTGA 10824083 >seq3143 Length=88675666 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 71028950 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 71028891 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | || || ||||||||||| |||||||| || ||| Sbjct 71028890 CCAATGGGCTGAAGCAAGTTAATATTATTACTTCCCACAAAGTTCTGAGCCAAATTCACA 71028831 Query 117425 ATCGT 117429 || || Sbjct 71028830 ATAGT 71028826 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 71028950 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 71028891 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | ||| | || || ||||| || |||||||||||||||||| Sbjct 71028890 CCAATGGGCTGAAGCAAGTTAATATTATTACTTCCCACAAAGTTCTGAGCCAAATTCACA 71028831 Query 152149 ATCGT 152153 || || Sbjct 71028830 ATAGT 71028826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547194494411200