Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq2965 150 2e-31
seq3082 145 9e-30
seq3063 113 5e-20
seq3105 109 6e-19
seq2997 104 3e-17
seq3135 100 3e-16
seq3143 82.4 9e-11
>seq2965
Length=1497097
Score = 150 bits (166), Expect = 2e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | |
Sbjct 1203657 AATGCAGATCTTCGTAAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCCAG 1203716
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||||| ||| | ||||| || || || ||||||||||| || || || |||||
Sbjct 1203717 TGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 1203776
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | || || || ||||| ||||| || || || | || ||||| | ||||| ||
Sbjct 1203777 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTACAA 1203836
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || || ||| |||| || | |||||
Sbjct 1203837 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGAGGTGG 1203884
Score = 145 bits (160), Expect = 9e-30
Identities = 163/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | ||
Sbjct 1203886 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCCAGT 1203945
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | ||||| || || || ||||||||||| || || || ||||||
Sbjct 1203946 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 1204005
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || || ||||| ||||| || || || | || ||||| | ||||| ||
Sbjct 1204006 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 1204065
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||| ||||| ||||| || || || ||| |||| ||
Sbjct 1204066 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCT 1204103
>seq3082
Length=10725151
Score = 145 bits (160), Expect = 9e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || || || || || |||||||| || || | ||||| ||| | |
Sbjct 1251008 AATGCAAATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCCAG 1251067
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||||| ||| ||||||| || || ||||| ||||| || ||||| || |||||
Sbjct 1251068 CGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCACCTGACCA 1251127
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | || || ||||| || ||||| || || |||| ||| || || | ||||| ||
Sbjct 1251128 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAA 1251187
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || |||||||| || || || |||| || | |||||
Sbjct 1251188 CATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1251235
>seq3063
Length=7952490
Score = 113 bits (124), Expect = 5e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || || || ||||| || | ||| || || || |||||||| |
Sbjct 5877503 ATGCAGATTTTCGTAAAAACCCTTACGGGGAGGACCATCACCCTCCAGGTTGAGCCCTCC 5877562
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
| | || | |||| | ||||| || || || || ||||| ||||||||||| || |||
Sbjct 5877563 AACACTATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGATCAG 5877622
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | || || |||| |||||||||||| || |||| | || | | || || ||
Sbjct 5877623 CAAAGGCTGATCTTTGTTGGTAAGCAACTGGAAGATGGATGCACTTTGTCTGATTACAAC 5877682
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||| ||| |||||||| ||||| || ||| | || || |||||
Sbjct 5877683 ATTCAAAGGGAGTCCACTCTCCATCTTGTGTTGAGACTCCGTGGTGG 5877729
>seq3105
Length=21505965
Score = 109 bits (120), Expect = 6e-19
Identities = 159/225 (71%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||| || ||||| || || |||| || ||||| || | | ||| ||| |
Sbjct 7417562 ATGCCGATTTTTGTAAAAACCTTTACAGGGAAGACCATCATCCACGAGACTGAACCCCTG 7417503
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | |||| | ||||| || || ||||| ||||| ||||||||||| || |||
Sbjct 7417502 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 7417443
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | || || ||||||| || ||||| || |||| ||||| | | || || ||
Sbjct 7417442 CAAAGGCTGATCTTTGCTGCTACACAACTGGAAGATGGACGTACTTTGTCTGATTACAAC 7417383
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630
| |||||||| |||||||||||||| || ||| | || || |||
Sbjct 7417382 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTCCGTGGT 7417338
>seq2997
Length=2481227
Score = 104 bits (114), Expect = 3e-17
Identities = 119/158 (75%), Gaps = 3/158 (2%)
Strand=Plus/Plus
Query 27477 AAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536
|||| | ||||| || || ||||| ||||| ||||||||||| || ||||| | || ||
Sbjct 411556 AAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAGGGCTGAT 411615
Query 27537 TTTTGCTGGTAAGCAACTCGAGGAT--GATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
||||||||||||||||| || ||| ||| |||| | | | || || | ||||||
Sbjct 411616 CTTTGCTGGTAAGCAACTGGAAGATTGGAT-GTACTTTGTCTGGTTACAACATTCAAAAG 411674
Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| | |||||||||||| || ||| | || | |||||
Sbjct 411675 GAGTTCACTCTTCATCTTGTGTTGAGACTCCATGGTGG 411712
>seq3135
Length=60673567
Score = 100 bits (110), Expect = 3e-16
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| || | |||||||| || || |||||||||||| | |
Sbjct 60530223 ATGCAGATATTCGTGAAGACCCTAAGGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 60530282
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || || ||| | || || ||||| || |||||||| || || || || ||||||
Sbjct 60530283 GACACCAGTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGCATCCCACCCGACCAG 60530342
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
| || || | ||||| || || || || ||||| | ||| || || | ||||| ||
Sbjct 60530343 CGGCTCCTGGTATTTGCCGGCAAACAGCTGGAGGACGGTCGGACTCTCTCGGACTACAAC 60530402
Query 27586 GTCCAAAAGGAATCC 27600
| || || || |||
Sbjct 60530403 ATTCAGAAAGAGTCC 60530417
>seq3143
Length=88675666
Score = 82.4 bits (90), Expect = 9e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184
|| ||||| || | |||||||||||||| || ||||| | ||||| || ||||
Sbjct 71028826 ACTATTGTGAATTTGGCTCAGAACTTTGTGGGAAGTAATAATATTAACTTGCTTCAGCCC 71028885
Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244
||| |||||||| || ||||| |||||||| |||||||| ||| | ||||| ||
Sbjct 71028886 ATTGGTCAGTTTGGAACTCGGCTTCATGGTGGCAAAGATGCTGCAAGCCCTCGTTATATT 71028945
Query 32245 TTCAC 32249
|||||
Sbjct 71028946 TTCAC 71028950
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570287986801280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |