Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq3139 96.9 4e-15 >seq3139 Length=61496919 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 32670 GCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATA 32729 |||||||||| || || | |||||||| | || ||| | || || | || || || Sbjct 52688634 GCCTTGTGGTGGTACTTCGTATCTAAAGGAGTGGAGTATTTGGACACAGTATTTTTTATC 52688575 Query 32730 ATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTT 32789 |||| |||||| ||||||||| || |||||||| || || || | ||||||||| Sbjct 52688574 CTGAGGAAGAAAAACAACCAAGTTTCTTTCTTGCACGTGTATCATCACTGTACCATGTTC 52688515 Query 32790 ACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 || | | ||||| || ||||| ||| ||||||||||||| Sbjct 52688514 ACACTGTGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 52688474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603157094994560