Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq3122 168 9e-37 seq3042 125 9e-24 >seq3122 Length=33939536 Score = 168 bits (186), Expect = 9e-37 Identities = 605/936 (65%), Gaps = 29/936 (3%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 ||||| ||| || |||| | || || || || ||||| || ||| |||| ||||| Sbjct 27422742 CCCCTTAGCAAAGAGGAGGCAGGCTTCCCGATTGCGTACTCCATAGTGGTCCATCACAAA 27422801 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 ||||||||| | || | || || |||||||| || || ||||| |||| ||| || Sbjct 27422802 ATCGAGATGCTTGACAGGCTTCTAAGGGCCATTTATATGCCTCAGAATTTCTATTGCATC 27422861 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCAT--CCGGGGCGTCTCGGCCATCGCCAGGT 13848 || |||||| || || ||| ||||| ||| || | | |||||| | Sbjct 27422862 CATGTGGACAGAAAATCAAAGGACTCCTTCATAGCCGCGGTGAAAGG--CATCGCGTCCT 27422919 Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908 | ||| || || ||||| | |||| | |||||| |||| || ||||| | Sbjct 27422920 GTTTCAGGAATGTCTTTGTGGCCAGTCAGCTGGAGAGCGTGGTCTACGCATCGTGGAGCC 27422979 Query 13909 GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGT 13968 | |||||||| ||||| | ||||||| |||||| || || | |||| || Sbjct 27422980 GGGTGCAGGCTGACCTGAACTGCATGAAGGACCTCTACAGAATGAGCGCGGACTGGAAGT 27423039 Query 13969 ACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGG 14028 ||||| ||||||| || |||||||| || || | || ||||||||||| || || || Sbjct 27423040 ACCTGATCAACCTTTGTGGGATGGATTTTCCCATTAAAACCAACCTGGAAATTGTCAGGA 27423099 Query 14029 CGCTGAAGGC---CCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACA 14085 ||| ||| | | |||| | | ||| ||||||| ||| ||||| ||||| Sbjct 27423100 AGCTCAAGTCGTTCATGGGTG---AAAACAGTCTGGAGACGGAGAAGATGCCATCCCACA 27423156 Query 14086 A-GCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACC 14144 | || | | | ||||||||||| | | || ||| | || |||| Sbjct 27423157 AAGCAGAAAGGT----GGAAGAGGCACTATGCAGTTGTCGACGGGAAGCTGACAGACACG 27423212 Query 14145 GGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTT 14204 || | ||| | | ||| ||||||| | || | || | || | ||| |||||| Sbjct 27423213 GGGACCCCCAAAACGCAGCCTCCGCTCAAAACACCTCTTTTCTCAGGGAGCGCCTACTTT 27423272 Query 14205 GCGGTCACCCGGGAGTTCGTGGACTTCGTCCTC---AAGGACGAG--CCGGTGGCCCTGC 14259 | ||||| | |||||| |||| || || || || || || |||| | Sbjct 27423273 GTGGTCAGCAGGGAGTATGTGGGCTATGTGCTGGAAAATGAAGACATCCGGAAGT----- 27423327 Query 14260 TCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGA 14319 ||||| | ||| | |||||||||||||| || ||| | || |||||||| | || | Sbjct 27423328 TCATGGAGTGGGCACAAGACACGTACAGCCCTGATGAGTATCTCTGGGCCACGATCCAAA 27423387 Query 14320 GAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGT 14379 | || | | | || || | ||| | || |||||||||| || |||||| Sbjct 27423388 GGATCCCTGAGGCCCCAGGCTCCCTGCCCCTGAACCACAAGTACGACCTATCTGACATGC 27423447 Query 14380 GGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCC 14439 |||| || |||||||||||||||||| ||| || ||||| | || || || || | Sbjct 27423448 AGGCCGTGGCCAGGTTCGTCAAGTGGCAGTACCTTGAAGGGGACCTGAACAAGGGCGCGC 27423507 Query 14440 TGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACG 14499 || || || || || || |||| || | | | | ||||| || || | || ||| Sbjct 27423508 CCTATCCCCCGTGTGATGGGGTCCATGTACGCAGCGTGTGCATTTTTGGAGCTGGGGACT 27423567 Query 14500 TGAAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACG--GA 14557 ||| |||| || | || | ||| | || ||||||||||| ||| | | |||| || Sbjct 27423568 TGACGTGGATGCTGCGCAAACACCACTTTTTTGCCAACAAGTTTGAC-ATG-GACGTCGA 27423625 Query 14558 CGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCG 14593 | || ||| | | |||||||| ||| | |||| Sbjct 27423626 CCTCTTTGCCATCCAGTGTCTGGATGAGCATCTGCG 27423661 >seq3042 Length=4956042 Score = 125 bits (138), Expect = 9e-24 Identities = 567/887 (64%), Gaps = 30/887 (3%) Strand=Plus/Plus Query 13672 CCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA 13731 |||||||| || ||| || || |||||||| ||||| || ||| | || | || | Sbjct 2814965 CCCTGAGCAAAGAGGAGTCAGACTTCCCCATCGCGTACTCTATGGTGGTTCATGAGAAAA 2815024 Query 13732 TCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCC 13791 |||||| || ||| | || ||| | || | ||| || ||||| | ||||| ||| Sbjct 2815025 TCGAGAACTTTGAGAGGCTGCTGCGAGCTGTGTACATGCCACAGAATGTGTACTGTATCC 2815084 Query 13792 ACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCT 13851 |||||||| || || || |||| || ||| ||| ||||| |||| Sbjct 2815085 ACGTGGACAAGAAATCTCCAGAAATGTTCCAAGAGGCAGTCAGGGCGATCGCTTCCTGCT 2815144 Query 13852 TCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCG 13911 |||| || || | | ||| | |||| |||||| |||| ||||||| | | Sbjct 2815145 TCCCAAATGTCTTCATAGCCAGCAAGCTGGTTCCCGTGGTTTACGCCTCCTGGTCCAGGG 2815204 Query 13912 TGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACC 13971 ||||||| ||||| | ||||||| |||| || | ||| || ||||| ||| Sbjct 2815205 TGCAGGCTGACCTGAACTGCATGGAGGACTTGCTCCGGAGCCCAGTGCGGTGGACCTACT 2815264 Query 13972 TGCTCA--ACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGC 14029 |||| | |||||| |||| ||||| || | ||||||||| ||||| || ||||| Sbjct 2815265 TGCTGAATACCTGT--GGGACAGACTTTCCCATAAAGACCAACGCTGAGATGGTCCGGGC 2815322 Query 14030 GCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCA---ACCACAA 14086 |||| | || ||| |||||| | ||||| || || |||| | |||| Sbjct 2815323 CCTGAGGATGTTGAACGGGAAGAACAGCATGGAGTCAGA---AATCCCCAGCGAGTACAA 2815379 Query 14087 GCTGCACCGCATCAGGAAGAGGC---ACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACAC 14143 ||| || |||| | |||||||| || | | | || || || Sbjct 2815380 -AAAAACCCGAT--GGAAATATCACTACGTGGTG--AAG----GACAAGTTGTACATAAC 2815430 Query 14144 CGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTT 14203 | ||| ||| |||| || || || || | |||| || | || || || ||| | Sbjct 2815431 CAGCAAGAAGAAGGAGCCTCCCCCTTACAACGTAACCATGTTCACCGGCAATGCCTACAT 2815490 Query 14204 TGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCC---CTGCT 14260 || || | ||||| ||||| | |||||| || || || || | ||| Sbjct 2815491 TGTGGCTTCTCGGGACTTCGTCCATCACGTCCTAAATAAC---CCTAAATCCCAGCAGCT 2815547 Query 14261 CATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAG 14320 || | ||| | | ||||| ||||| || ||||| || || ||||||||| | ||| | Sbjct 2815548 GATCGAATGGGTGAAAGACACCTACAGTCCTGACGAACATCTCTGGGCCACCCTCCAGCG 2815607 Query 14321 AATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTG 14380 | ||| |||||| ||| | || | |||||| |||| |||||||||| Sbjct 2815608 GGCCCCCTGGATGCCCGGCTCTTCGCCCTTGCATGCCAAGTATGACATCTCGGACATGAC 2815667 Query 14381 GGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCT 14440 |||| | |||| | ||||||||||| | | ||||| || |||| | ||||| | Sbjct 2815668 CGCCATTGCCAGGCTGGTCAAGTGGCAGCAACATGAGGGTGACATCAGCCAGGGGGCACC 2815727 Query 14441 GTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGT 14500 || |||||| || ||||| | ||||||||||| | ||| |||| ||| | Sbjct 2815728 TTATGGACCTTGCTCTGGGGTCCACCGGCGGGCCATCTGCATTTATGGGGCCGGGGACCT 2815787 Query 14501 GAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 | | ||| || | || || | || ||||| ||||||||||| ||| Sbjct 2815788 GCACTGGATGCTGCAGAATCAC-CATCTGTTGGCCAACAAGTTTGAC 2815833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658713311549440