Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_028379.1
Length=205896
Score E
Sequences producing significant alignments: (Bits) Value
seq3122 168 9e-37
seq3042 125 9e-24
>seq3122
Length=33939536
Score = 168 bits (186), Expect = 9e-37
Identities = 605/936 (65%), Gaps = 29/936 (3%)
Strand=Plus/Plus
Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730
||||| ||| || |||| | || || || || ||||| || ||| |||| |||||
Sbjct 27422742 CCCCTTAGCAAAGAGGAGGCAGGCTTCCCGATTGCGTACTCCATAGTGGTCCATCACAAA 27422801
Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790
||||||||| | || | || || |||||||| || || ||||| |||| ||| ||
Sbjct 27422802 ATCGAGATGCTTGACAGGCTTCTAAGGGCCATTTATATGCCTCAGAATTTCTATTGCATC 27422861
Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCAT--CCGGGGCGTCTCGGCCATCGCCAGGT 13848
|| |||||| || || ||| ||||| ||| || | | |||||| |
Sbjct 27422862 CATGTGGACAGAAAATCAAAGGACTCCTTCATAGCCGCGGTGAAAGG--CATCGCGTCCT 27422919
Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908
| ||| || || ||||| | |||| | |||||| |||| || ||||| |
Sbjct 27422920 GTTTCAGGAATGTCTTTGTGGCCAGTCAGCTGGAGAGCGTGGTCTACGCATCGTGGAGCC 27422979
Query 13909 GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGT 13968
| |||||||| ||||| | ||||||| |||||| || || | |||| ||
Sbjct 27422980 GGGTGCAGGCTGACCTGAACTGCATGAAGGACCTCTACAGAATGAGCGCGGACTGGAAGT 27423039
Query 13969 ACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGG 14028
||||| ||||||| || |||||||| || || | || ||||||||||| || || ||
Sbjct 27423040 ACCTGATCAACCTTTGTGGGATGGATTTTCCCATTAAAACCAACCTGGAAATTGTCAGGA 27423099
Query 14029 CGCTGAAGGC---CCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACA 14085
||| ||| | | |||| | | ||| ||||||| ||| ||||| |||||
Sbjct 27423100 AGCTCAAGTCGTTCATGGGTG---AAAACAGTCTGGAGACGGAGAAGATGCCATCCCACA 27423156
Query 14086 A-GCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACC 14144
| || | | | ||||||||||| | | || ||| | || ||||
Sbjct 27423157 AAGCAGAAAGGT----GGAAGAGGCACTATGCAGTTGTCGACGGGAAGCTGACAGACACG 27423212
Query 14145 GGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTT 14204
|| | ||| | | ||| ||||||| | || | || | || | ||| ||||||
Sbjct 27423213 GGGACCCCCAAAACGCAGCCTCCGCTCAAAACACCTCTTTTCTCAGGGAGCGCCTACTTT 27423272
Query 14205 GCGGTCACCCGGGAGTTCGTGGACTTCGTCCTC---AAGGACGAG--CCGGTGGCCCTGC 14259
| ||||| | |||||| |||| || || || || || || |||| |
Sbjct 27423273 GTGGTCAGCAGGGAGTATGTGGGCTATGTGCTGGAAAATGAAGACATCCGGAAGT----- 27423327
Query 14260 TCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGA 14319
||||| | ||| | |||||||||||||| || ||| | || |||||||| | || |
Sbjct 27423328 TCATGGAGTGGGCACAAGACACGTACAGCCCTGATGAGTATCTCTGGGCCACGATCCAAA 27423387
Query 14320 GAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGT 14379
| || | | | || || | ||| | || |||||||||| || ||||||
Sbjct 27423388 GGATCCCTGAGGCCCCAGGCTCCCTGCCCCTGAACCACAAGTACGACCTATCTGACATGC 27423447
Query 14380 GGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCC 14439
|||| || |||||||||||||||||| ||| || ||||| | || || || || |
Sbjct 27423448 AGGCCGTGGCCAGGTTCGTCAAGTGGCAGTACCTTGAAGGGGACCTGAACAAGGGCGCGC 27423507
Query 14440 TGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACG 14499
|| || || || || || |||| || | | | | ||||| || || | || |||
Sbjct 27423508 CCTATCCCCCGTGTGATGGGGTCCATGTACGCAGCGTGTGCATTTTTGGAGCTGGGGACT 27423567
Query 14500 TGAAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACG--GA 14557
||| |||| || | || | ||| | || ||||||||||| ||| | | |||| ||
Sbjct 27423568 TGACGTGGATGCTGCGCAAACACCACTTTTTTGCCAACAAGTTTGAC-ATG-GACGTCGA 27423625
Query 14558 CGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCG 14593
| || ||| | | |||||||| ||| | ||||
Sbjct 27423626 CCTCTTTGCCATCCAGTGTCTGGATGAGCATCTGCG 27423661
>seq3042
Length=4956042
Score = 125 bits (138), Expect = 9e-24
Identities = 567/887 (64%), Gaps = 30/887 (3%)
Strand=Plus/Plus
Query 13672 CCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA 13731
|||||||| || ||| || || |||||||| ||||| || ||| | || | || |
Sbjct 2814965 CCCTGAGCAAAGAGGAGTCAGACTTCCCCATCGCGTACTCTATGGTGGTTCATGAGAAAA 2815024
Query 13732 TCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCC 13791
|||||| || ||| | || ||| | || | ||| || ||||| | ||||| |||
Sbjct 2815025 TCGAGAACTTTGAGAGGCTGCTGCGAGCTGTGTACATGCCACAGAATGTGTACTGTATCC 2815084
Query 13792 ACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCT 13851
|||||||| || || || |||| || ||| ||| ||||| ||||
Sbjct 2815085 ACGTGGACAAGAAATCTCCAGAAATGTTCCAAGAGGCAGTCAGGGCGATCGCTTCCTGCT 2815144
Query 13852 TCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCG 13911
|||| || || | | ||| | |||| |||||| |||| ||||||| | |
Sbjct 2815145 TCCCAAATGTCTTCATAGCCAGCAAGCTGGTTCCCGTGGTTTACGCCTCCTGGTCCAGGG 2815204
Query 13912 TGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACC 13971
||||||| ||||| | ||||||| |||| || | ||| || ||||| |||
Sbjct 2815205 TGCAGGCTGACCTGAACTGCATGGAGGACTTGCTCCGGAGCCCAGTGCGGTGGACCTACT 2815264
Query 13972 TGCTCA--ACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGC 14029
|||| | |||||| |||| ||||| || | ||||||||| ||||| || |||||
Sbjct 2815265 TGCTGAATACCTGT--GGGACAGACTTTCCCATAAAGACCAACGCTGAGATGGTCCGGGC 2815322
Query 14030 GCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCA---ACCACAA 14086
|||| | || ||| |||||| | ||||| || || |||| | ||||
Sbjct 2815323 CCTGAGGATGTTGAACGGGAAGAACAGCATGGAGTCAGA---AATCCCCAGCGAGTACAA 2815379
Query 14087 GCTGCACCGCATCAGGAAGAGGC---ACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACAC 14143
||| || |||| | |||||||| || | | | || || ||
Sbjct 2815380 -AAAAACCCGAT--GGAAATATCACTACGTGGTG--AAG----GACAAGTTGTACATAAC 2815430
Query 14144 CGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTT 14203
| ||| ||| |||| || || || || | |||| || | || || || ||| |
Sbjct 2815431 CAGCAAGAAGAAGGAGCCTCCCCCTTACAACGTAACCATGTTCACCGGCAATGCCTACAT 2815490
Query 14204 TGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCC---CTGCT 14260
|| || | ||||| ||||| | |||||| || || || || | |||
Sbjct 2815491 TGTGGCTTCTCGGGACTTCGTCCATCACGTCCTAAATAAC---CCTAAATCCCAGCAGCT 2815547
Query 14261 CATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAG 14320
|| | ||| | | ||||| ||||| || ||||| || || ||||||||| | ||| |
Sbjct 2815548 GATCGAATGGGTGAAAGACACCTACAGTCCTGACGAACATCTCTGGGCCACCCTCCAGCG 2815607
Query 14321 AATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTG 14380
| ||| |||||| ||| | || | |||||| |||| ||||||||||
Sbjct 2815608 GGCCCCCTGGATGCCCGGCTCTTCGCCCTTGCATGCCAAGTATGACATCTCGGACATGAC 2815667
Query 14381 GGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCT 14440
|||| | |||| | ||||||||||| | | ||||| || |||| | ||||| |
Sbjct 2815668 CGCCATTGCCAGGCTGGTCAAGTGGCAGCAACATGAGGGTGACATCAGCCAGGGGGCACC 2815727
Query 14441 GTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGT 14500
|| |||||| || ||||| | ||||||||||| | ||| |||| ||| |
Sbjct 2815728 TTATGGACCTTGCTCTGGGGTCCACCGGCGGGCCATCTGCATTTATGGGGCCGGGGACCT 2815787
Query 14501 GAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546
| | ||| || | || || | || ||||| ||||||||||| |||
Sbjct 2815788 GCACTGGATGCTGCAGAATCAC-CATCTGTTGGCCAACAAGTTTGAC 2815833
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658713311549440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |