Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2965 86.0 4e-12 >seq2965 Length=1497097 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || |||| |||| || || ||| |||||| || ||||| || || || Sbjct 1203885 GCCACCTCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1203826 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| ||||||| || || || || || || || | | ||| ||||| || || Sbjct 1203825 GAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGG 1203766 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| |||| || | || || | ||| ||||| | ||| | Sbjct 1203765 GATGCCCTCCTTGTCTTGGATC-TTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTA 1203707 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || || | || || || || |||||||| Sbjct 1203706 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCAT 1203658 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || |||| |||| || || ||| |||||| || ||||| || || || Sbjct 1204112 CCTCCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1204053 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| ||||||| || || || || || || || | | ||| ||||| || || Sbjct 1204052 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGG 1203993 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || || | ||| ||||| | ||| || Sbjct 1203992 ATGCCCTCCTTGTCTTGGATC-TTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 1203934 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||| || || || || || | || ||||| || ||||||||| Sbjct 1203933 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATG 1203885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314717540348552