Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq3129 163 3e-35 >seq3129 Length=43247874 Score = 163 bits (180), Expect = 3e-35 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| |||||||||||||| || || || |||||||||||||| |||||||| | ||| Sbjct 41738093 GATCTTCCTCTGATGGCGCTGCCTCCCTGTCACACCCTCTGCCAGTTCTACGTGGTGAAC 41738152 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 ||||| ||||||| ||||| || || || || || |||||||| | || ||||| ||| Sbjct 41738153 GGGGAATTGTCCTGTCAGCTGTACCAGCGCTCTGGGGACATGGGCCTGGGCGTGCCCTTC 41738212 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 |||||||| || ||||| |||||||| |||||||| || || ||| Sbjct 41738213 AACATTGCCAGCTACGCCCTGCTCACCTACATGATTGCGCACGTC 41738257 Score = 163 bits (180), Expect = 3e-35 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| || || |||||||| |||||||| ||||| || ||||||||||| ||||| || | Sbjct 41738257 GACGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACGCCCAG 41738198 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 |||||||| || || || || || ||||| ||||||| ||||| ||| | |||||||| Sbjct 41738197 GCCCATGTCCCCAGAGCGCTGGTACAGCTGACAGGACAATTCCCCGTTCACCACGTAGAA 41738138 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||||||||||| || || || |||||||||||||| ||||| Sbjct 41738137 CTGGCAGAGGGTGTGACAGGGAGGCAGCGCCATCAGAGGAAGATC 41738093 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| || || || ||| ||| ||||| || ||||| || | |||||||||||||| | Sbjct 41734877 CCAAAGAACTGTCATCCAAGGGCGTGAAAATTTGGGATGCCAATGGGTCTCGAGACTTCC 41734936 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||||| | |||||| | || |||| || ||| ||||||| | || || |||| Sbjct 41734937 TGGACAGCCTGGGGTTTTCTAGCCGCCAGGAAGGGGACCTGGGCCCCATTTATGGCTTCC 41734996 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| || |||||||| ||||| Sbjct 41734997 AGTGGAGGCATTTTGGGGCTGAGTA 41735021 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| |||||||| || ||||||||||| || || | ||||||| ||| || |||| Sbjct 41735021 TACTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAATGGGGCCCAGGTCCCCTTCCTGG 41734962 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | |||||| | ||||||| |||||||||||||| | || ||||| || ||| Sbjct 41734961 CGGCTAGAAAACCCCAGGCTGTCCAGGAAGTCTCGAGACCCATTGGCATCCCAAATTTTC 41734902 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || ||| ||| || || || |||| Sbjct 41734901 ACGCCCTTGGATGACAGTTCTTTGG 41734877 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519 || || || || || || |||| |||||||||||| | ||||| |||||| | || Sbjct 41736713 GCAGATTACTCAGGTCAAGGAGTTGACCAGCTGCAGAAAGTGATTGACACCATCAAAACC 41736772 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 ||||||||||||||||| || | ||||| || ||||||||||| Sbjct 41736773 AACCCTGATGACAGAAGAATTATCATGTGTGCCTGGAACCCGAA 41736816 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 ||||||||||| || ||||| | || ||||||||||||||||| || | |||||| Sbjct 41736816 TTCGGGTTCCAGGCACACATGATAATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCA 41736757 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGC 6885 ||||| | |||||||||||| |||| || || || || || || Sbjct 41736756 ATCACTTTCTGCAGCTGGTCAACTCCTTGACCTGAGTAATCTGC 41736713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448244783287680