Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq3108 165 7e-36 seq3129 105 6e-18 >seq3108 Length=23989115 Score = 165 bits (182), Expect = 7e-36 Identities = 178/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349 ||||| |||||||||||| || | ||||||||||||||||||||| | ||||| Sbjct 13844616 ATTGTGACATGGCAAAAAAAGAAGGATATAAGCCCAGAAAACATGGCCACCTACAGTAAG 13844675 Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409 | || |||||||| || ||||| | || | |||| |||||||| || ||| | ||| Sbjct 13844676 AAACATGGGGTTGTGGTCCAGCCTCCCTATATGGATAGGATGAACATCACCGAGGTGGGA 13844735 Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469 | || || || | || ||||||||||| ||||| |||| ||||||||||| |||| | Sbjct 13844736 TTGCAGAAGTCAGCCATCACCTTCTGGAATGCAACACTGGAGGATGAAGGGTGTTACATG 13844795 Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 ||| | || || || ||||| |||||||||| ||||||| | || || ||||| Sbjct 13844796 TGTCTCTTCAATACCTTTGGCGCTGGGAAGATCTCAGGAACAACCTGCCTTACCCT 13844851 >seq3129 Length=43247874 Score = 105 bits (116), Expect = 6e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 3254 GAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAGTTTGGTGGT 3313 ||||||||| | |||||||| ||||||||| | ||||| || ||||||||||| ||||| Sbjct 2213266 GAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAGTTCGGTGGG 2213325 Query 3314 GTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAACATTGCCGCG 3373 || ||||||||||| || ||||| | | || | | || || |||||||| ||| Sbjct 2213326 GTCATGTGTGTGGAGAGTGTCAACCGGGAGATGTCACCTCTGGTGGACAACATCGCCCTC 2213385 Query 3374 TGGATGACAGA 3384 |||||||| || Sbjct 2213386 TGGATGACTGA 2213396 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| || | || ||||||||| | || || || Sbjct 41738265 AGGCCCGTGACGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 41738206 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||| |||||||| | || | |||||||| || || || | |||||||| | Sbjct 41738205 ACGCCCAGGCCCATGTCCCCAGAGCGCTGGTACAGCTGACAGGACAATTCCCCGTTCACC 41738146 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || || ||||| | | | ||||||| |||||||| |||| Sbjct 41738145 ACGTAGAACTGGCAGAGGGTGTGACAGGGAGGCAGCGCCAT 41738105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414460918285216