Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3082 185 2e-41 seq2965 168 2e-36 seq3063 158 3e-33 seq3061 150 4e-31 seq3105 145 2e-29 seq2997 145 2e-29 seq3126 122 2e-22 seq3080 122 2e-22 seq3135 113 1e-19 >seq3082 Length=10725151 Score = 185 bits (204), Expect = 2e-41 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| |||||||||||||| |||||||| || || | ||| || | |||||| Sbjct 1251448 AGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1251389 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| |||||||| | || ||||||||||||| ||||| || ||| Sbjct 1251388 TCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 1251329 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || |||||||| | || ||||| |||||||| ||| Sbjct 1251328 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGAGTGATGGTC 1251269 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 1251268 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1251237 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| |||||||| |||||||| || || | ||| || | |||||| Sbjct 1251676 AGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1251617 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || ||||||||||||| ||||| || ||| Sbjct 1251616 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 1251557 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | || || || || ||||| ||| Sbjct 1251556 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTC 1251497 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 1251496 TTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| |||||||||||||| |||||||| || || | ||| || | |||||| Sbjct 1251220 AGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1251161 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || |||||||| |||| |||||||| ||| Sbjct 1251160 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCC 1251101 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || |||||||| | || ||||| | ||||| ||| Sbjct 1251100 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTC 1251041 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || || || || | |||||||| Sbjct 1251040 TTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTT 1251006 >seq2965 Length=1497097 Score = 168 bits (186), Expect = 2e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | || ||| Sbjct 1203869 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCT 1203810 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || | || |||||||| || | || |||||||| Sbjct 1203809 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 1203750 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | || |||||||| ||||| ||| Sbjct 1203749 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTC 1203690 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| |||||||| || | ||||||| Sbjct 1203689 TTGCCAGTGAGGGTCTTTACGAAGATCTGCATT 1203657 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | || ||| Sbjct 1204097 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCT 1204038 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || | || |||||||| || | || |||||||| Sbjct 1204037 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 1203978 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | || |||||||| ||||| ||| Sbjct 1203977 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTC 1203918 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 1203917 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 1203886 >seq3063 Length=7952490 Score = 158 bits (174), Expect = 3e-33 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| | ||||| || ||||||||||| |||| ||||| ||||| | | || Sbjct 5877724 ACGGAGTCTCAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGACAAAGT 5877665 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||| ||||| || | ||||| || | ||| || |||||||||| ||| Sbjct 5877664 GCATCCATCTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCC 5877605 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| || |||||||| || || ||||| || |||| ||| ||||||| ||| Sbjct 5877604 TTCCTTATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTTGGAGGGCTCAACCTGGAG 5877545 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||| | ||||| || || ||||| || | |||||| || Sbjct 5877544 GGTGATGGTCCTCCCCGTAAGGGTTTTTACGAAAATCTGCATCTT 5877500 >seq3061 Length=7642621 Score = 150 bits (166), Expect = 4e-31 Identities = 164/216 (76%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || ||||| |||||||||| ||| ||||| ||||| ||||| | | || | ||| Sbjct 2174633 TCTCAGCACAAGATGAAGAGTGGTCTCCTTTTGAATGTTGTAATCAGACAAAGTGCATCC 2174574 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||||| || || || ||||| || | |||||| |||||||||| ||||||||| Sbjct 2174573 ATCTTCCAG----TTACCAGCAAAGATCAGCCTTTGTTGATCAGGAGGAATTCCTTCCTT 2174518 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||||||||||| || || ||||| | ||||| || |||| ||| ||| ||||| Sbjct 2174517 ATCCTGGATCTTGGCCTTTACATTTTCTACAGTGTCTGAAGGTTCAGCCTTGAGGGTGAT 2174458 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || || |||| || | |||||| Sbjct 2174457 GGTCTTTCCTGTAAGGGT-TTTATGAAAATCTGCAT 2174423 >seq3105 Length=21505965 Score = 145 bits (160), Expect = 2e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| | ||||| |||||||||||||| ||||| ||||| ||||| | | || Sbjct 7417341 ACGGAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGT 7417400 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||| || | | || ||||| || | ||| || |||||||||| ||| Sbjct 7417401 ACGTCCATCTTCCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCC 7417460 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||||| || || ||||| || ||||| | |||| |||| | Sbjct 7417461 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTCGTG 7417520 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||| ||||| || || | || |||||||| | | |||| || Sbjct 7417521 GATGATGGTCTTCCCTGTAAAGGTTTTTACAAAAATCGGCATCTT 7417565 >seq2997 Length=2481227 Score = 145 bits (160), Expect = 2e-29 Identities = 167/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| | ||||| ||||||||| |||| ||||| ||||| ||| | | | || | | Sbjct 411703 AGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGACAAAGTACAT 411644 Query 210957 CCA-TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||| |||||||| ||||| || || ||||| || | ||| || |||||||||| |||||| Sbjct 411643 CCAATCTTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTC 411584 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| ||||||||||| || || ||||| | ||||| ||| |||||||||||| || Sbjct 411583 CTTATCCTGGATCTTGGCCTTTACATTTTCTACAGTGTCCGAGGGTTCAACCTCGAG-GT 411525 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 | | ||||| ||| | | || |||| || | ||| || || Sbjct 411524 GGTGGTCTTCCCCATAACGGTTTTTATGAAAATCTGTATCTT 411483 >seq3126 Length=40167016 Score = 122 bits (134), Expect = 2e-22 Identities = 157/214 (73%), Gaps = 11/214 (5%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||||||||||||||| || || | || |||| ||||| Sbjct 36688775 AGTACCAGGTGTAGGGTGGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTCCAACCATCC 36688834 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| |||| ||||| || |||| || || ||||| || | | |||||||| Sbjct 36688835 TCCAGCTGTTTGCTGGCGAATATCAGGCACTGCTGTTCAGGTGGGATGCTCTCCTTGTCT 36688894 Query 211023 TGGATCTTTTGTTTCACGTTTTCGA--TGGTGTCAGAGCTTTCAACCTCGAGAGTGATCG 211080 |||| ||||| ||||| || |||||||| | || |||||||| || | | Sbjct 36688895 TGGA--TTTTG------GTTTT-GACTTGGTGTCACTGGGCTCGACCTCGAGGATGGTGG 36688945 Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| ||||| || ||||| || || | |||||| Sbjct 36688946 TCTTACCCGTCAGGGTCTTCACGAAGATCTGCAT 36688979 >seq3080 Length=10554711 Score = 122 bits (134), Expect = 2e-22 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||||||| ||||| |||||||| ||||| ||||| ||||| ||||| | | | Sbjct 4932291 ACGGAGTCTTAGCACAAGATGAAGAGTCGACTCCTTTTGAATGTTGTAATCAGACAAAAT 4932350 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 |||||||||||| ||||| |||| ||||| || ||| || |||||| ||| | | Sbjct 4932351 ATGTCCATCTTCCAGTTGCTTACCTGTAAAGATCAGCTTTTGCTGATCAGGAAGAATTGC 4932410 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 |||||| ||||||||||| || || ||||| |||| ||| Sbjct 4932411 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGGCGTC 4932452 >seq3135 Length=60673567 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 210920 GGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGC 210979 ||||||||| || ||||| || |||| || |||| || || |||||||| ||||| || Sbjct 60530417 GGACTCTTTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCCGGC 60530358 Query 210980 GAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCAC 211039 || | ||| | | ||||| || || | ||||||||||| ||||| || ||| || Sbjct 60530357 AAATACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTGAC 60530298 Query 211040 GTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTT 211099 || || ||||||| | |||||||| || ||||| ||||| ||| | || ||||| Sbjct 60530297 ATTCTCACTGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCCTTAGGGTCTT 60530238 Query 211100 TACAAACACCTGCAT 211114 || || | |||||| Sbjct 60530237 CACGAATATCTGCAT 60530223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159105306459560