Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq3063 105 5e-18
seq3135 98.7 7e-16
seq3061 95.1 8e-15
seq3082 93.3 3e-14
seq2997 91.5 1e-13
seq3105 87.8 1e-12
>seq3063
Length=7952490
Score = 105 bits (116), Expect = 5e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| |||||||| ||||| | || ||||| ||| | ||||| ||
Sbjct 5877500 AAGATGCAGATTTTCGTAAAAACCCTTACGGGGAGGACCATCACCCTCCAGGTTGAGCCC 5877559
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| | |||| |||| || || || || ||||| | || || |||
Sbjct 5877560 TCCAACACTATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGAT 5877619
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| || | | || |||| || || ||||||||||| | | ||||||| ||||||
Sbjct 5877620 CAGCAAAGGCTGATCTTTGTTGGTAAGCAACTGGAAGATGGATGCACTTTGTCTGATTAC 5877679
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
||||| |||| |||||||| | ||| | || || ||
Sbjct 5877680 AACATTCAAAGGGAGTCCACTCTCCATCTTGTGTTGAG 5877717
>seq3135
Length=60673567
Score = 98.7 bits (108), Expect = 7e-16
Identities = 141/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| | ||| || || ||||| || || ||||| |||
Sbjct 60530223 ATGCAGATATTCGTGAAGACCCTAAGGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 60530282
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| ||| ||| | ||| | |||| | ||||| ||||| | || || || ||
Sbjct 60530283 GACACCAGTGAGAATGTCAAAGCCAAAA-TCCAAGACAAGGAAGGCATCCCACCCGACCA 60530341
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
| || | |||||||||||||||| ||||| |||| || ||| | || |||||
Sbjct 60530342 GCGGCTCCTGGTATTTGCCGGCAAACAGCTGGAGGACGGTCGGACTCTCTCGGACTACAA 60530401
Query 23790 CATACAAAAAGAGTCC 23805
||| || |||||||||
Sbjct 60530402 CATTCAGAAAGAGTCC 60530417
>seq3061
Length=7642621
Score = 95.1 bits (104), Expect = 8e-15
Identities = 140/197 (71%), Gaps = 5/197 (3%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||| | |||||||| || ||||| || ||||| ||| | | ||| | |
Sbjct 2174423 ATGCAGATTTTCAT-AAAACCCTTACAGGAAAGACCATCACCCTCAAGGCTGAACCTTCA 2174481
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||||| |||| |||| || || || || ||||| | || || ||||||
Sbjct 2174482 GACACTGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAA 2174541
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | | || ||||| || || |||||||| | | ||||||| |||||||||
Sbjct 2174542 CAAAGGCTGATCTTTGCTGGTAA----CTGGAAGATGGATGCACTTTGTCTGATTACAAC 2174597
Query 23791 ATACAAAAAGAGTCCAC 23807
|| ||||| ||| ||||
Sbjct 2174598 ATTCAAAAGGAGACCAC 2174614
>seq3082
Length=10725151
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || || || || || || |||||||| || || || |||
Sbjct 1251237 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGC 1251296
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | || | | || |||||||| | || || || ||
Sbjct 1251297 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGATAAAGAAGGCATTCCTCCTGACCA 1251355
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||| ||||| || |||||||| | |||||| | || |||||
Sbjct 1251356 GCAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAA 1251415
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||||||
Sbjct 1251416 CATCCAGAAAGAGTCCAC 1251433
Score = 89.7 bits (98), Expect = 3e-13
Identities = 142/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|||||||| || ||||| |||||||| || || || || ||||| | || || || ||
Sbjct 1251006 AAAATGCAAATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCC 1251065
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| |||| ||| | || | || | | || || ||||| | || || ||
Sbjct 1251066 AGCGACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGATAAGGAAGGCATTCCACCTGA 1251124
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|| ||| | | || ||||| ||||| || |||||||| | |||||| | || ||
Sbjct 1251125 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTA 1251184
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || |||||||||||
Sbjct 1251185 CAACATCCAGAAAGAGTCCAC 1251205
>seq2997
Length=2481227
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| || ||||||||| | |||||| | | ||| || || | ||| ||||| ||||| ||
Sbjct 411483 AAGATACAGATTTTCATAAAAACCGTTATGGGGAAGACCACCAC-CTCGAGGTTGAACCC 411541
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
|||||||||| |||| |||| || || || || ||||| | || || |||
Sbjct 411542 TCGGACACTGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 411601
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA-CGAACGCACTTTAGGCGATTA 23786
|| || | | || ||||| || || ||||||||||| | | | ||||| | |||
Sbjct 411602 CAGCAAGGGCTGATCTTTGCTGGTAAGCAACTGGAAGATTGGATGTACTTTGTCTGGTTA 411661
Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
|||||| ||||| |||| ||| | ||| | || || ||
Sbjct 411662 CAACATTCAAAAGGAGTTCACTCTTCATCTTGTGTTGAG 411700
>seq3105
Length=21505965
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||| |||||| || |||||| | || || || || |||| | ||| ||| ||
Sbjct 7417565 AAGATGCCGATTTTTGTAAAAACCTTTACAGGGAAGACCATCATCCACGAGACTGAACCC 7417506
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
||||||| | |||| |||| || || || || ||||| | || || |||
Sbjct 7417505 CTGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 7417446
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| || | | || ||||| | | |||||||||||| | ||| ||||| ||||||
Sbjct 7417445 CAGCAAAGGCTGATCTTTGCTGCTACACAACTGGAAGATGGACGTACTTTGTCTGATTAC 7417386
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
||||| ||||| |||||||| | ||| | || || ||
Sbjct 7417385 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAG 7417348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337996648317152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |