Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 273 2e-68
seq3143 95.1 1e-14
>seq3106
Length=22756556
Score = 273 bits (302), Expect = 2e-68
Identities = 591/877 (67%), Gaps = 13/877 (1%)
Strand=Plus/Minus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| || ||| ||| | ||| || ||||| || || || ||||||| |||||||| |||
Sbjct 217554 TGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTCC 217495
Query 4320 ATAAAATCAAACGGATTAGTTGCG-TTGTAATGTTTTTC-ACACTTTAGAGCTACAAGCA 4377
|| || ||||| ||||| || | ||| || || | | | || ||| | |
Sbjct 217494 ATGAAGTCAAATGGATT--TTCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGA 217437
Query 4378 ATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATC 4437
| |||||| || || || || ||||| ||||||| |||||||| || ||||| |
Sbjct 217436 GCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCT 217377
Query 4438 TCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATAT 4497
|||| || | || | || | ||||| || || || | ||||| | ||| || |
Sbjct 217376 TCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACGATAATCT 217317
Query 4498 CTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAAT 4557
| || | | | | || ||| ||| | | || |||| | || || || |
Sbjct 217316 CCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAACATCAGGCAGGCGAAGT 217257
Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617
|||| |||| || || |||||||| || ||||| || ||||| || | |||||||| |
Sbjct 217256 CACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGA 217197
Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677
|| | || || ||||| || || | ||||| || |||||||| || |||||||| |
Sbjct 217196 GTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCA 217137
Query 4678 CGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTA 4737
|||| ||||| ||||| | || ||| | | | ||||||| |||||| |
Sbjct 217136 CGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCAATCCAGCGCA 217077
Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA--ATTT 4795
| ||||||| | || ||| || || || || || | || || || || | | |
Sbjct 217076 AGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGATGGCATTGAAGAGGAACT 217020
Query 4796 ACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854
| ||| || ||| |||| |||||||| || || || || || |||||||||||||
Sbjct 217019 CCCTTTCTC---TGGAATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCAGAAT 216963
Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914
| || ||||| || || ||||| || ||||| || || | ||| ||||| | ||||||||
Sbjct 216962 GAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTT 216903
Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974
| | | || | || || || || || || ||||| || || ||||| ||||| || |
Sbjct 216902 CTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAAGAAAG 216843
Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034
||| ||| || ||||||||||| || || ||||| || || |||||| | | |
Sbjct 216842 CCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCCAGTGCTGAATGT 216783
Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094
|||| | | ||| || || || | |||||||| || || || ||||| || |||||
Sbjct 216782 CTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATACATCT 216723
Query 5095 ACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131
|||||| ||| | || | || || | ||||||||
Sbjct 216722 GCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686
>seq3143
Length=88675666
Score = 95.1 bits (104), Expect = 1e-14
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| || ||||| |||||||| || |||||||| ||||| |||||||| ||||| ||||||
Sbjct 4813948 TGATACTCGGAAACTCGCTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 4813889
Query 4320 ATAAAATCAAACGGATT 4336
||||||||||| |||||
Sbjct 4813888 ATAAAATCAAAGGGATT 4813872
Score = 86.0 bits (94), Expect = 5e-12
Identities = 86/111 (77%), Gaps = 3/111 (3%)
Strand=Plus/Minus
Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
|||||||| || |||||||| ||||| || || ||||||||||| ||||| || || |
Sbjct 4803027 AAAATCTT---ACCAAGTTTTCATTTACAATTCCATCACTGGCTGCGAAAAAGGCTAAGA 4802971
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031
|| || ||||| |||| || || || || || || |||||||||||||
Sbjct 4802970 TGTGGGAAATAAAATACTTCTCCTCTGGTTTGAGCTTGTTCCAGTGGGGCA 4802920
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427033236526952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |