Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3106 273 2e-68 seq3143 95.1 1e-14 >seq3106 Length=22756556 Score = 273 bits (302), Expect = 2e-68 Identities = 591/877 (67%), Gaps = 13/877 (1%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || ||| ||| | ||| || ||||| || || || ||||||| |||||||| ||| Sbjct 217554 TGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTCC 217495 Query 4320 ATAAAATCAAACGGATTAGTTGCG-TTGTAATGTTTTTC-ACACTTTAGAGCTACAAGCA 4377 || || ||||| ||||| || | ||| || || | | | || ||| | | Sbjct 217494 ATGAAGTCAAATGGATT--TTCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGA 217437 Query 4378 ATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATC 4437 | |||||| || || || || ||||| ||||||| |||||||| || ||||| | Sbjct 217436 GCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCT 217377 Query 4438 TCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATAT 4497 |||| || | || | || | ||||| || || || | ||||| | ||| || | Sbjct 217376 TCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACGATAATCT 217317 Query 4498 CTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAAT 4557 | || | | | | || ||| ||| | | || |||| | || || || | Sbjct 217316 CCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAACATCAGGCAGGCGAAGT 217257 Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617 |||| |||| || || |||||||| || ||||| || ||||| || | |||||||| | Sbjct 217256 CACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGA 217197 Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677 || | || || ||||| || || | ||||| || |||||||| || |||||||| | Sbjct 217196 GTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCA 217137 Query 4678 CGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTA 4737 |||| ||||| ||||| | || ||| | | | ||||||| |||||| | Sbjct 217136 CGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCAATCCAGCGCA 217077 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA--ATTT 4795 | ||||||| | || ||| || || || || || | || || || || | | | Sbjct 217076 AGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGATGGCATTGAAGAGGAACT 217020 Query 4796 ACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854 | ||| || ||| |||| |||||||| || || || || || ||||||||||||| Sbjct 217019 CCCTTTCTC---TGGAATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCAGAAT 216963 Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914 | || ||||| || || ||||| || ||||| || || | ||| ||||| | |||||||| Sbjct 216962 GAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTT 216903 Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | | | || | || || || || || || ||||| || || ||||| ||||| || | Sbjct 216902 CTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAAGAAAG 216843 Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034 ||| ||| || ||||||||||| || || ||||| || || |||||| | | | Sbjct 216842 CCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCCAGTGCTGAATGT 216783 Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 |||| | | ||| || || || | |||||||| || || || ||||| || ||||| Sbjct 216782 CTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATACATCT 216723 Query 5095 ACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 |||||| ||| | || | || || | |||||||| Sbjct 216722 GCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686 >seq3143 Length=88675666 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || ||||| |||||||| || |||||||| ||||| |||||||| ||||| |||||| Sbjct 4813948 TGATACTCGGAAACTCGCTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 4813889 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 4813888 ATAAAATCAAAGGGATT 4813872 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/111 (77%), Gaps = 3/111 (3%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || |||||||| ||||| || || ||||||||||| ||||| || || | Sbjct 4803027 AAAATCTT---ACCAAGTTTTCATTTACAATTCCATCACTGGCTGCGAAAAAGGCTAAGA 4802971 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031 || || ||||| |||| || || || || || || ||||||||||||| Sbjct 4802970 TGTGGGAAATAAAATACTTCTCCTCTGGTTTGAGCTTGTTCCAGTGGGGCA 4802920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427033236526952