Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq3129 120 2e-22 >seq3129 Length=43247874 Score = 120 bits (132), Expect = 2e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||||||| || |||||||| ||||| || | ||||||||| ||||| ||||| Sbjct 41738265 AGGCCCGTGACGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 41738206 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||||||||| || | |||||| |||||||| || | || || | Sbjct 41738205 ACGCCCAGGCCCATGTCCCCAGAGCGCTGGTACAGCTGACAGGACAATTCCCCGTTCACC 41738146 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | || ||| || ||||| || ||||| || Sbjct 41738145 ACGTAGAACTGGCAGAGGGTGTGACAGGGAGGCAGCGCCATCAG 41738102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369493041407864