Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3106 416 4e-111 seq3140 138 2e-27 seq3040 127 3e-24 seq3127 86.0 9e-12 seq3018 86.0 9e-12 >seq3106 Length=22756556 Score = 416 bits (460), Expect = 4e-111 Identities = 627/890 (70%), Gaps = 6/890 (1%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 |||||||||||||| | ||||| || || || | ||||| || || || || || ||| Sbjct 217572 GACATAACTCCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCT 217513 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAAT 47954 || | || ||||| ||||| || ||||||||||| | | | | ||| || ||| Sbjct 217512 TCTAGAGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAG 217453 Query 47955 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAA 48014 || | ||| || || || || || ||||| || || || ||||| | || || Sbjct 217452 CCCAGCTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAG 217393 Query 48015 TTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACA 48074 ||||| || || || || ||||| | |||||||| || ||||| || ||||| |||| Sbjct 217392 TTCATGCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACG 217333 Query 48075 GCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAAC 48134 || | || || ||| | ||| | | ||| ||| || || || || || ||| Sbjct 217332 GCGTTGACGATAATCTCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAAC 217273 Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 || | || || || ||||| || || || |||||||| || || | ||| || ||||| Sbjct 217272 ATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAG 217213 Query 48195 GTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA 48254 ||||| |||||||| ||||| ||||| || ||||| || || | ||| ||||| |||||| Sbjct 217212 GTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAA 217153 Query 48255 AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG 48314 || || |||||||| ||||| ||||| || | | || || ||| |||| || ||| Sbjct 217152 AAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTG 217093 Query 48315 T---GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATA 48371 | ||||| || ||||| || | ||||||| ||||| ||||| || || || Sbjct 217092 TCCCCAATCCAGCGCAAGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGATG 217036 Query 48372 GCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTA 48431 ||||| ||||| || | |||| || |||||| | |||||||| || | ||||| Sbjct 217035 GCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGACTG 216976 Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491 |||||||| || ||||| ||||| || || ||||| || ||||| ||||| | || ||| Sbjct 216975 TACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCT 216916 Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 ||||| || || || | || || || ||||||||||||| ||||| ||||| || Sbjct 216915 GTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTG 216856 Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTC 48611 || ||||| || || | || ||| ||||| ||| | || | || |||| | | Sbjct 216855 GCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCC 216796 Query 48612 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCT 48671 |||| | || ||||| || | ||| || || || || |||||||| || ||||| ||| Sbjct 216795 CAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCT 216736 Query 48672 TTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 || |||||||| | ||| || ||| ||||| ||| ||||| || ||||| Sbjct 216735 TTCTTATACATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686 >seq3140 Length=75551126 Score = 138 bits (152), Expect = 2e-27 Identities = 477/734 (65%), Gaps = 29/734 (4%) Strand=Plus/Plus Query 76785 AACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCC 76844 ||||| || ||| || ||| || | | | || ||| ||||| ||||| || | |||| Sbjct 7457035 AACTGGATAGGATTAGCTGCATGTCTGGACCTTAAATAATACATCCCAGTCTTCAAACCC 7457094 Query 76845 AGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGA 76904 || ||| || | ||||| || | || ||| ||| ||| || ||||| Sbjct 7457095 AGCTTCCCGCCACCAAGGTGCATACTGATAAGCTTGCCATAGATAGACTCAATGATATGG 7457154 Query 76905 ATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATG 76964 || |||| ||||| |||||||| ||||||| |||||||||||| |||| || | || Sbjct 7457155 ATGTTCACAGACTGGCTTTGATCAATGAAAGAACCTCTATCAGCCACCATCTTGAGAACA 7457214 Query 76965 GTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGT-T 77023 || | |||| |||||||| | | || ||| || || | |||||| |||| | | Sbjct 7457215 GTTTCCTGAGAGATTTCCCATACCATCTTATAAAGCTGCTTCAGATCATCAGGAATTTCT 7457274 Query 77024 TGT--ATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCAC 77081 || | | || | || ||| ||| ||||| ||| || || || |||||||| Sbjct 7457275 AGTACACTCTGTGTAGAGCCATTGCCTGCAATAATCTGATTTTTCATTTCTTCATTCCAT 7457334 Query 77082 AATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGAC 77141 || | | ||| || | | | | | |||||||| || | ||| ||||||| ||| Sbjct 7457335 AACCT-CACTCAGTAAGATGTTTCCATAAGTGAGGATTTACAACCTGACATTCTCCTGAC 7457393 Query 77142 AATACTCTAC---GAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 77198 || ||||| | ||||||| || || |||||| | ||||| || || || Sbjct 7457394 AAGACTCTTCTTTGAGTGTAGATGTTGCTGGTACAAGGTTCAGTGGACTCGTT------- 7457446 Query 77199 AAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 77258 | | ||||| | |||||||| ||||| || || | | |||| | |||| | ||| Sbjct 7457447 --ATTCTGAGCCGCTGAAGCAGTAGGCATTGGGGCAATAAGTAAATTGCTTCTTATGCCA 7457504 Query 77259 TGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCC 77318 | || || || || || | | |||||| ||||| || ||| ||| ||||| | Sbjct 7457505 TACTTTGCAATCTTCTCCTTGACAAGTTTCCAGTCCCACAGGTCTACAGGAGTAACATTC 7457564 Query 77319 CAAAGATCGTATTGTAGAATTCCGTTACTAGCATAT----GATCCATTATATGTTTCATA 77374 || | ||| | || || ||||| || || ||| || | | ||| |||||||| Sbjct 7457565 CACACATCATCATGAAGGATTCCTTT----GCTTATTGGAGAGCTTTCATAGGTTTCATA 7457620 Query 77375 AGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTT 77433 || | || || || |||| |||| | ||||||| |||| || ||| | || Sbjct 7457621 TGGGCTTTGCTCCTT-GGCTAAATCAC-ATGGGCTTCCAGGACTCCATAGTAAGTAGTCC 7457678 Query 77434 CGAAAATCTTCTTATTGAG-ATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGA 77492 | || || | |||||| || | | | || || ||| ||||| ||||| | || Sbjct 7457679 CAAAGATTTGCTTATTTAGTAACCAG-GCCTCTGGACTCTCAAAAGGATATCTCATCAGG 7457737 Query 77493 ATAAAGGCATCTGC 77506 ||||| |||||||| Sbjct 7457738 ATAAAAGCATCTGC 7457751 >seq3040 Length=4637412 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 3956947 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 3956888 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || ||||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 3956887 TCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 3956828 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 3956827 TTTCTTACACCAT 3956815 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| | ||||| || |||||| Sbjct 3936213 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAGAGAAGATTG 3936154 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| || | |||||||| || |||||||| || | ||| | ||||||| Sbjct 3936153 TATGTTTCAATTGCAGCATCTATGTCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 3936094 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| || ||||||||| || Sbjct 3936093 ATATGTTGCGGTCTTTCAGCC 3936073 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| ||||| || || || ||| ||| |||| || || ||||| || | Sbjct 3960743 TCCAGCCATAGAAGTGCATACTGGTGAGCTTGCCATAGTTAGGCTCAGCAATATGGATGT 3960684 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||||| |||||||| |||||||| ||||||||||| ||||| || | | || | Sbjct 3960683 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCTGCCATCTTGAGTACAGTTT 3960624 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||| |||||||| | || || ||| ||| || | ||||| |||| Sbjct 3960623 TCTGAGAGATTTCCCAGACTGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 3960573 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || ||||| | || | || Sbjct 3941767 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 3941708 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||||||||| || | ||| |||||||| | || || ||||||| || Sbjct 3941707 TCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 3941648 Query 78123 TCTAGATATATTGC 78136 || || || || || Sbjct 3941647 TCCAGGTAAATAGC 3941634 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 77704 CTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAG 77763 ||||||||| | ||| ||||| || ||| || || || || || || |||||||| | Sbjct 3943329 CTACCTCATCTTTGCTGGTATATTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTG 3943270 Query 77764 TGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAG 77823 | ||||| || || |||||||||||| ||| || || || || || || || |||| | Sbjct 3943269 TTCCCAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATGTACGGGG 3943210 Query 77824 TCCCGGTTTCAATCTGTGATTCGATAAT 77851 | || || || |||| || |||||||| Sbjct 3943209 TACCCGTCTCTGTCTGAGACTCGATAAT 3943182 >seq3127 Length=41527808 Score = 86.0 bits (94), Expect = 9e-12 Identities = 225/340 (66%), Gaps = 24/340 (7%) Strand=Plus/Minus Query 45877 CCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTTC 45936 |||||||| ||||| ||| || | ||||| || ||| || ||| ||||| | Sbjct 92371 CCAGTGGAACCAAAGCCTCCAGAAGCCCTTTCGGTGTTATCCAGTCCTTGAACTTCTTCT 92312 Query 45937 AGATCAGG---ATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | || || |||||| || ||| | | || || || || || | |||||| | || Sbjct 92311 ATTTCTGGGTAATAATAAATTTGTTCACAAATGAGCTGGGCAATGCGATCACCTTTCCTT 92252 Query 45994 ATTTCAAA-TATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATC 46052 | |||||| | | ||||||||| ||| || | ||| ||||| | ||||||||||| Sbjct 92251 ACTTCAAACTTTTTCTTTTCCAAAATTACACAACACGACACCAATACTTCCTCTATAATC 92192 Query 46053 TTCATCTATTACTCCCCCTCCCACATCGATACCTTTTAGAGACAGTCCAGATCTAGGAGC 46112 |||||| || || || |||| ||||| || || || ||||||| | || Sbjct 92191 TTCATCGATGACCCCAGCTCCAACATCTAT--------GA---AG-CCAGATCGTGACGC 92144 Query 46113 TATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATC 46168 | ||||||| | ||||| |||| || ||| ||||||| ||||| | || | Sbjct 92143 TGCTCTTCCAAAGCACCCAGAA----GGCAGAGTGATCTGAATATCCGTTTTCACAAAGC 92088 Query 46169 TCCTTTCTCCAGGAGGGATAGTATAGTCGTACGCACTGTA 46208 || | ||| | || |||||||| || |||||||| Sbjct 92087 GTTTTCCCATAGGTTGTATTGTATAGTCATAGGCACTGTA 92048 >seq3018 Length=3443724 Score = 86.0 bits (94), Expect = 9e-12 Identities = 108/146 (74%), Gaps = 8/146 (5%) Strand=Plus/Plus Query 47790 GTTCTT-TAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGAG-----ACATAACT 47843 |||||| ||||||||| |||| || | |||| ||| || | || | |||||||| Sbjct 3375791 GTTCTTCTAAAAGTCAGCATCCAATGTAAAAGAATTCTC--CGTGGGGCTGGACATAACT 3375848 Query 47844 CCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGAT 47903 ||||| | ||||| || || || | ||||| || || || || || ||||||| || Sbjct 3375849 CCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAGAGAA 3375908 Query 47904 ATATTTTCCATAAAATCAAATGGATT 47929 ||||| ||||| || ||||||||||| Sbjct 3375909 ATATTCTCCATGAAGTCAAATGGATT 3375934 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||| | |||||||| || | ||||| ||||||||||| ||||| ||||| || || Sbjct 3378004 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3378063 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || ||||| ||||| | || |||||||| || || || Sbjct 3378064 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 3378108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694641499516160