Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 416 4e-111
seq3140 138 2e-27
seq3040 127 3e-24
seq3127 86.0 9e-12
seq3018 86.0 9e-12
>seq3106
Length=22756556
Score = 416 bits (460), Expect = 4e-111
Identities = 627/890 (70%), Gaps = 6/890 (1%)
Strand=Plus/Minus
Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894
|||||||||||||| | ||||| || || || | ||||| || || || || || |||
Sbjct 217572 GACATAACTCCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCT 217513
Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAAT 47954
|| | || ||||| ||||| || ||||||||||| | | | | ||| || |||
Sbjct 217512 TCTAGAGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAG 217453
Query 47955 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAA 48014
|| | ||| || || || || || ||||| || || || ||||| | || ||
Sbjct 217452 CCCAGCTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAG 217393
Query 48015 TTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACA 48074
||||| || || || || ||||| | |||||||| || ||||| || ||||| ||||
Sbjct 217392 TTCATGCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACG 217333
Query 48075 GCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAAC 48134
|| | || || ||| | ||| | | ||| ||| || || || || || |||
Sbjct 217332 GCGTTGACGATAATCTCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAAC 217273
Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194
|| | || || || ||||| || || || |||||||| || || | ||| || |||||
Sbjct 217272 ATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAG 217213
Query 48195 GTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA 48254
||||| |||||||| ||||| ||||| || ||||| || || | ||| ||||| ||||||
Sbjct 217212 GTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAA 217153
Query 48255 AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG 48314
|| || |||||||| ||||| ||||| || | | || || ||| |||| || |||
Sbjct 217152 AAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTG 217093
Query 48315 T---GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATA 48371
| ||||| || ||||| || | ||||||| ||||| ||||| || || ||
Sbjct 217092 TCCCCAATCCAGCGCAAGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGATG 217036
Query 48372 GCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTA 48431
||||| ||||| || | |||| || |||||| | |||||||| || | |||||
Sbjct 217035 GCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGACTG 216976
Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491
|||||||| || ||||| ||||| || || ||||| || ||||| ||||| | || |||
Sbjct 216975 TACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCT 216916
Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551
||||| || || || | || || || ||||||||||||| ||||| ||||| ||
Sbjct 216915 GTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTG 216856
Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTC 48611
|| ||||| || || | || ||| ||||| ||| | || | || |||| | |
Sbjct 216855 GCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCC 216796
Query 48612 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCT 48671
|||| | || ||||| || | ||| || || || || |||||||| || ||||| |||
Sbjct 216795 CAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCT 216736
Query 48672 TTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721
|| |||||||| | ||| || ||| ||||| ||| ||||| || |||||
Sbjct 216735 TTCTTATACATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686
>seq3140
Length=75551126
Score = 138 bits (152), Expect = 2e-27
Identities = 477/734 (65%), Gaps = 29/734 (4%)
Strand=Plus/Plus
Query 76785 AACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCC 76844
||||| || ||| || ||| || | | | || ||| ||||| ||||| || | ||||
Sbjct 7457035 AACTGGATAGGATTAGCTGCATGTCTGGACCTTAAATAATACATCCCAGTCTTCAAACCC 7457094
Query 76845 AGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGA 76904
|| ||| || | ||||| || | || ||| ||| ||| || |||||
Sbjct 7457095 AGCTTCCCGCCACCAAGGTGCATACTGATAAGCTTGCCATAGATAGACTCAATGATATGG 7457154
Query 76905 ATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATG 76964
|| |||| ||||| |||||||| ||||||| |||||||||||| |||| || | ||
Sbjct 7457155 ATGTTCACAGACTGGCTTTGATCAATGAAAGAACCTCTATCAGCCACCATCTTGAGAACA 7457214
Query 76965 GTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGT-T 77023
|| | |||| |||||||| | | || ||| || || | |||||| |||| | |
Sbjct 7457215 GTTTCCTGAGAGATTTCCCATACCATCTTATAAAGCTGCTTCAGATCATCAGGAATTTCT 7457274
Query 77024 TGT--ATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCAC 77081
|| | | || | || ||| ||| ||||| ||| || || || ||||||||
Sbjct 7457275 AGTACACTCTGTGTAGAGCCATTGCCTGCAATAATCTGATTTTTCATTTCTTCATTCCAT 7457334
Query 77082 AATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGAC 77141
|| | | ||| || | | | | | |||||||| || | ||| ||||||| |||
Sbjct 7457335 AACCT-CACTCAGTAAGATGTTTCCATAAGTGAGGATTTACAACCTGACATTCTCCTGAC 7457393
Query 77142 AATACTCTAC---GAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 77198
|| ||||| | ||||||| || || |||||| | ||||| || || ||
Sbjct 7457394 AAGACTCTTCTTTGAGTGTAGATGTTGCTGGTACAAGGTTCAGTGGACTCGTT------- 7457446
Query 77199 AAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 77258
| | ||||| | |||||||| ||||| || || | | |||| | |||| | |||
Sbjct 7457447 --ATTCTGAGCCGCTGAAGCAGTAGGCATTGGGGCAATAAGTAAATTGCTTCTTATGCCA 7457504
Query 77259 TGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCC 77318
| || || || || || | | |||||| ||||| || ||| ||| ||||| |
Sbjct 7457505 TACTTTGCAATCTTCTCCTTGACAAGTTTCCAGTCCCACAGGTCTACAGGAGTAACATTC 7457564
Query 77319 CAAAGATCGTATTGTAGAATTCCGTTACTAGCATAT----GATCCATTATATGTTTCATA 77374
|| | ||| | || || ||||| || || ||| || | | ||| ||||||||
Sbjct 7457565 CACACATCATCATGAAGGATTCCTTT----GCTTATTGGAGAGCTTTCATAGGTTTCATA 7457620
Query 77375 AGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTT 77433
|| | || || || |||| |||| | ||||||| |||| || ||| | ||
Sbjct 7457621 TGGGCTTTGCTCCTT-GGCTAAATCAC-ATGGGCTTCCAGGACTCCATAGTAAGTAGTCC 7457678
Query 77434 CGAAAATCTTCTTATTGAG-ATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGA 77492
| || || | |||||| || | | | || || ||| ||||| ||||| | ||
Sbjct 7457679 CAAAGATTTGCTTATTTAGTAACCAG-GCCTCTGGACTCTCAAAAGGATATCTCATCAGG 7457737
Query 77493 ATAAAGGCATCTGC 77506
||||| ||||||||
Sbjct 7457738 ATAAAAGCATCTGC 7457751
>seq3040
Length=4637412
Score = 127 bits (140), Expect = 3e-24
Identities = 108/133 (81%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | ||
Sbjct 3956947 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 3956888
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| || ||||| || |||||||| |||||||| ||||| || || | | ||||||
Sbjct 3956887 TCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 3956828
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 3956827 TTTCTTACACCAT 3956815
Score = 114 bits (126), Expect = 2e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | || ||||| ||||| |||||||| | ||||| || ||||||
Sbjct 3936213 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAGAGAAGATTG 3936154
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
||||||||||| || | |||||||| || |||||||| || | ||| | |||||||
Sbjct 3936153 TATGTTTCAATTGCAGCATCTATGTCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 3936094
Query 78519 ATATGCTGAGGTCTTTCAACC 78539
||||| || ||||||||| ||
Sbjct 3936093 ATATGTTGCGGTCTTTCAGCC 3936073
Score = 111 bits (122), Expect = 2e-19
Identities = 127/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908
|||| || ||||| ||||| || || || ||| ||| |||| || || ||||| || |
Sbjct 3960743 TCCAGCCATAGAAGTGCATACTGGTGAGCTTGCCATAGTTAGGCTCAGCAATATGGATGT 3960684
Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968
||| ||||| |||||||| |||||||| ||||||||||| ||||| || | | || |
Sbjct 3960683 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCTGCCATCTTGAGTACAGTTT 3960624
Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019
| |||| |||||||| | || || ||| ||| || | ||||| ||||
Sbjct 3960623 TCTGAGAGATTTCCCAGACTGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 3960573
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||||||||| |||||||| || ||||| || |||| || ||||| | || | ||
Sbjct 3941767 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 3941708
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
||||| |||||||||||||| || | ||| |||||||| | || || ||||||| ||
Sbjct 3941707 TCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 3941648
Query 78123 TCTAGATATATTGC 78136
|| || || || ||
Sbjct 3941647 TCCAGGTAAATAGC 3941634
Score = 91.5 bits (100), Expect = 2e-13
Identities = 109/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 77704 CTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAG 77763
||||||||| | ||| ||||| || ||| || || || || || || |||||||| |
Sbjct 3943329 CTACCTCATCTTTGCTGGTATATTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTG 3943270
Query 77764 TGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAG 77823
| ||||| || || |||||||||||| ||| || || || || || || || |||| |
Sbjct 3943269 TTCCCAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATGTACGGGG 3943210
Query 77824 TCCCGGTTTCAATCTGTGATTCGATAAT 77851
| || || || |||| || ||||||||
Sbjct 3943209 TACCCGTCTCTGTCTGAGACTCGATAAT 3943182
>seq3127
Length=41527808
Score = 86.0 bits (94), Expect = 9e-12
Identities = 225/340 (66%), Gaps = 24/340 (7%)
Strand=Plus/Minus
Query 45877 CCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTTC 45936
|||||||| ||||| ||| || | ||||| || ||| || ||| ||||| |
Sbjct 92371 CCAGTGGAACCAAAGCCTCCAGAAGCCCTTTCGGTGTTATCCAGTCCTTGAACTTCTTCT 92312
Query 45937 AGATCAGG---ATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| || || |||||| || ||| | | || || || || || | |||||| | ||
Sbjct 92311 ATTTCTGGGTAATAATAAATTTGTTCACAAATGAGCTGGGCAATGCGATCACCTTTCCTT 92252
Query 45994 ATTTCAAA-TATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATC 46052
| |||||| | | ||||||||| ||| || | ||| ||||| | |||||||||||
Sbjct 92251 ACTTCAAACTTTTTCTTTTCCAAAATTACACAACACGACACCAATACTTCCTCTATAATC 92192
Query 46053 TTCATCTATTACTCCCCCTCCCACATCGATACCTTTTAGAGACAGTCCAGATCTAGGAGC 46112
|||||| || || || |||| ||||| || || || ||||||| | ||
Sbjct 92191 TTCATCGATGACCCCAGCTCCAACATCTAT--------GA---AG-CCAGATCGTGACGC 92144
Query 46113 TATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATC 46168
| ||||||| | ||||| |||| || ||| ||||||| ||||| | || |
Sbjct 92143 TGCTCTTCCAAAGCACCCAGAA----GGCAGAGTGATCTGAATATCCGTTTTCACAAAGC 92088
Query 46169 TCCTTTCTCCAGGAGGGATAGTATAGTCGTACGCACTGTA 46208
|| | ||| | || |||||||| || ||||||||
Sbjct 92087 GTTTTCCCATAGGTTGTATTGTATAGTCATAGGCACTGTA 92048
>seq3018
Length=3443724
Score = 86.0 bits (94), Expect = 9e-12
Identities = 108/146 (74%), Gaps = 8/146 (5%)
Strand=Plus/Plus
Query 47790 GTTCTT-TAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGAG-----ACATAACT 47843
|||||| ||||||||| |||| || | |||| ||| || | || | ||||||||
Sbjct 3375791 GTTCTTCTAAAAGTCAGCATCCAATGTAAAAGAATTCTC--CGTGGGGCTGGACATAACT 3375848
Query 47844 CCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGAT 47903
||||| | ||||| || || || | ||||| || || || || || ||||||| ||
Sbjct 3375849 CCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAGAGAA 3375908
Query 47904 ATATTTTCCATAAAATCAAATGGATT 47929
||||| ||||| || |||||||||||
Sbjct 3375909 ATATTCTCCATGAAGTCAAATGGATT 3375934
Score = 86.0 bits (94), Expect = 9e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460
|||||| | |||||||| || | ||||| ||||||||||| ||||| ||||| || ||
Sbjct 3378004 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3378063
Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505
||||| || ||||| ||||| | || |||||||| || || ||
Sbjct 3378064 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 3378108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694641499516160
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