Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 383 2e-101
seq3040 136 6e-27
seq3018 84.2 3e-11
>seq3106
Length=22756556
Score = 383 bits (424), Expect = 2e-101
Identities = 622/892 (70%), Gaps = 10/892 (1%)
Strand=Plus/Minus
Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383
|||||||||||||| | || || || ||||| | ||||| || || || || || |||
Sbjct 217572 GACATAACTCCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCT 217513
Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAAT 46443
|| | || ||||| ||||| || ||||| ||||| || | | ||| || |||
Sbjct 217512 TCTAGAGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAG 217453
Query 46444 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAA 46503
|| | ||| || || || || || ||||| || || ||| ||||| | || ||
Sbjct 217452 CCCAGCTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAG 217393
Query 46504 TTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACA 46563
||||| || || || || || || | |||||||| || ||||| || || || ||||
Sbjct 217392 TTCATGCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACG 217333
Query 46564 GCATC--CGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAA 46621
|| | ||||| | || | || | | ||| ||| |||||||| || || |
Sbjct 217332 GCGTTGACGATAATCTCCTTC--ACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGA 217275
Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681
|||| | || || || ||||| || ||||| |||||||| || || | ||| || ||||
Sbjct 217274 ACATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAA 217215
Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741
| ||||| || ||||| ||||| || || || ||||| || || | ||| ||||| ||||
Sbjct 217214 AGGTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAG 217155
Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT 46801
|||| || |||||||| || || || || || || | | || || ||| |||| || |
Sbjct 217154 AAAAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTT 217095
Query 46802 TATG---AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTA 46858
| | |||||| | ||||| || | ||| ||| ||||| ||||| || || |
Sbjct 217094 TGTCCCCAATCCAGCGCAAGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGA 217038
Query 46859 TAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGAC 46918
| ||||| ||||| || | |||| |||||| | ||| ||||| || | ||||
Sbjct 217037 TGGCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGAC 216978
Query 46919 TATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 46978
| |||||||| |||||||||||||| || || ||||| || ||||| ||||| | || |
Sbjct 216977 TGTACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCT 216918
Query 46979 CAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCAC 47038
| || || || || ||| | || || || |||||||||||| ||||| ||||| |
Sbjct 216917 CTGTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGC 216858
Query 47039 TAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTAT 47098
| || ||||| || |||| || ||| ||||| ||| | || |||| |||| |
Sbjct 216857 TGGCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTT 216798
Query 47099 TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTG 47158
||||| | || ||||| || | ||| || || || || ||||| || || ||||| |
Sbjct 216797 CCCAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGG 216738
Query 47159 CTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210
|||| |||||||| | ||| || ||| | |||| ||| || || || |||||
Sbjct 216737 CTTTCTTATACATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686
>seq3040
Length=4637412
Score = 136 bits (150), Expect = 6e-27
Identities = 110/133 (83%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| ||||| |||||||||||||| || ||||||||||| ||||| | ||
Sbjct 3956947 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 3956888
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| || ||||| || ||||||||||||||||| ||||| || || | | ||||||
Sbjct 3956887 TCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 3956828
Query 75842 TTTCTGAGACCAT 75854
||||| | |||||
Sbjct 3956827 TTTCTTACACCAT 3956815
Score = 105 bits (116), Expect = 1e-17
Identities = 126/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503
|||| || ||||| ||||| || || || ||| ||| | || || || ||||| || |
Sbjct 3960743 TCCAGCCATAGAAGTGCATACTGGTGAGCTTGCCATAGTTAGGCTCAGCAATATGGATGT 3960684
Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563
||| ||||| |||||||| |||||||| ||||||||||| ||||| || | | || |
Sbjct 3960683 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCTGCCATCTTGAGTACAGTTT 3960624
Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614
| |||| |||||||| | || || ||| ||| || | ||||| ||||
Sbjct 3960623 TCTGAGAGATTTCCCAGACTGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 3960573
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| || ||||| || | || ||||| |||||||| ||||| | ||||| || ||||||
Sbjct 3936213 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTCTCAGAGAGAAGATTG 3936154
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
||||||||||| | || ||||| || || |||||||| |||| || | |||||||
Sbjct 3936153 TATGTTTCAATTGCAGCATCTATGTCTTCTTTGTGAATTCCCACAGATACCCTCATCAAC 3936094
Query 77114 ATATGCTGAGGTCGTTC 77130
||||| || |||| |||
Sbjct 3936093 ATATGTTGCGGTCTTTC 3936077
Score = 87.8 bits (96), Expect = 3e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558
||||| || ||| ||| |||||||| ||||||||||| ||||||| |||||||||
Sbjct 3942268 TCATACCGTTCATACAACTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACAC 3942209
Query 76559 TCATTCGGACACATCAATGACCACTC 76584
||||| ||||||||||| ||||| ||
Sbjct 3942208 TCATTTGGACACATCAAAGACCAGTC 3942183
Score = 86.0 bits (94), Expect = 9e-12
Identities = 110/150 (73%), Gaps = 4/150 (3%)
Strand=Plus/Minus
Query 76299 CTACCTCAT--TAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGAT 76356
||||||||| | || ||| ||||| || ||| || ||||| || || || || |||||
Sbjct 3943329 CTACCTCATCTTTGC--TGGTATATTCTACTATTTCTGTGCACAGGTTGCTGCATTTGAT 3943272
Query 76357 AGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGG 76416
||||| || || || |||||||||||| ||||| || || || || || | ||||
Sbjct 3943271 TGTTCCCAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATGTACGG 3943212
Query 76417 AGTTCCAGTTTCAATCTGTGATTCGATAAT 76446
|| || || || |||| || ||||||||
Sbjct 3943211 GGTACCCGTCTCTGTCTGAGACTCGATAAT 3943182
Score = 86.0 bits (94), Expect = 9e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009
|| || | ||| ||||| || | || | || | ||||| || || || || || |
Sbjct 3951802 GAGCCTTCATAAGTTTCATACGGACCATGCTCCTTGGCTAGATCACAGCTGGCTTCCAGG 3951743
Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069
|| || |||||||| || || || || | |||||| || || ||||| |||| |||
Sbjct 3951742 GCTCCATAATAAATAGTCTCAAAGATTTGCTTATTTAGTAACTGGGCTTCTGGACTCTCA 3951683
Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129
|||||||| | || ||||| |||||||| || || || || ||||| ||||| ||
Sbjct 3951682 AAAGGATATCTCATCAGGATAAAAGCATCTGCCAGGCCTTGTACACCAATTCCAATGGGG 3951623
Query 76130 CTATGTCTCTTATTGGA 76146
| ||| | ||||| ||
Sbjct 3951622 CGATGACGTTTATTTGA 3951606
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657
|| |||||||| |||||||| || ||||| || |||| || ||||| | || | |
Sbjct 3941767 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 3941708
Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717
||||| |||||||||||||| || | ||| || ||||| | || || ||||||| ||
Sbjct 3941707 TCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 3941648
Query 76718 TCTAGATATATCGC 76731
|| || || || ||
Sbjct 3941647 TCCAGGTAAATAGC 3941634
>seq3018
Length=3443724
Score = 84.2 bits (92), Expect = 3e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
|||||| | ||| ||||| || | ||||| |||||||| |||||||||||||| || ||
Sbjct 3378004 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3378063
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995
||||| || ||||| ||||| | || || || || || || |||
Sbjct 3378064 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 3378109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712906381678080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |