Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_031224.1
Length=59443
Score E
Sequences producing significant alignments: (Bits) Value
seq3129 82.4 3e-11
>seq3129
Length=43247874
Score = 82.4 bits (90), Expect = 3e-11
Identities = 108/147 (73%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168
|||||| || ||||||| || || || | ||| ||||| || | |||| || | | ||
Sbjct 41738105 ATGGCGCTGCCTCCCTGTCACACCCTCTGCCAGTTCTACGTGG-TGAACGGGGAATTGTC 41738163
Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228
|| || |||| ||||| |||| |||||| | ||||||| || || |||||||||||
Sbjct 41738164 CTGTCAGCTGTACCAGCGCTCTGGGGACATGGGCCTGGGCGTGCCCTTCAACATTGCCAG 41738223
Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255
||| || |||| || | |||||||
Sbjct 41738224 CTACGCCCTGCTCACCTACATGATTGC 41738250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 190088902765840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |