Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq3129 82.4 3e-11 >seq3129 Length=43247874 Score = 82.4 bits (90), Expect = 3e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 |||||| || ||||||| || || || | ||| ||||| || | |||| || | | || Sbjct 41738105 ATGGCGCTGCCTCCCTGTCACACCCTCTGCCAGTTCTACGTGG-TGAACGGGGAATTGTC 41738163 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 || || |||| ||||| |||| |||||| | ||||||| || || ||||||||||| Sbjct 41738164 CTGTCAGCTGTACCAGCGCTCTGGGGACATGGGCCTGGGCGTGCCCTTCAACATTGCCAG 41738223 Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255 ||| || |||| || | ||||||| Sbjct 41738224 CTACGCCCTGCTCACCTACATGATTGC 41738250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190088902765840